Factsheet for Solyc06g036290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
cytosol 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0107900-02	Rice	cytosol	35.75	87.15
Solyc03g007890.2.1	Tomato	cytosol, extracellular, nucleus, plastid	95.88	83.26
GSMUA_Achr8P19130_001	Banana	cytosol	77.43	80.76
TraesCS2A01G033700.1	Wheat	plastid	88.8	76.24
TraesCS2B01G047400.1	Wheat	cytosol	89.13	75.98
TraesCS2D01G033200.2	Wheat	golgi	89.13	75.98
Solyc12g015880.1.1	Tomato	nucleus	87.15	75.68
PGSC0003DMT400074377	Potato	cytosol	50.91	75.55
Solyc07g065840.2.1	Tomato	nucleus, plastid	86.82	75.39
Zm00001d024903_P001	Maize	plasma membrane	88.63	75.35
EES11741	Sorghum	cytosol	88.8	75.28
Solyc04g081570.2.1	Tomato	plastid	53.87	40.27
Solyc05g010670.2.1	Tomato	plastid	49.26	37.99
Solyc07g047790.2.1	Tomato	mitochondrion, nucleus, plastid	48.27	36.9
Solyc04g081630.1.1	Tomato	cytosol	7.25	16.48

Protein Annotations

Gene3D:1.20.120.790	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140	Gene3D:3.40.50.11260
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890
InterPro:IPR037196	UniProt:K4C4Z6	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583
PRINTS:PR00775	ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF74	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387
SUPFAM:SSF110942	SUPFAM:SSF54211	SUPFAM:SSF55874	EnsemblPlantsGene:Solyc06g036290.2	EnsemblPlants:Solyc06g036290.2.1	UniParc:UPI0002765F58
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:25803161..25806396

Molecular Weight (calculated)

70206.8 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.612

Length

607 amino acids

Sequence
(BLAST)

001: MAEAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDAQ PELFIRLVPD KVNKTLSIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALQ AGADVSMIGQ FGVGFYSAYL VAEKVIVTTK HNDDEQYIWE SQAGGSFTVT RDVDGEQLGR GTKITLFLKE DQLEYLEERR IKDLVKKHSE
201: FISYPIYLWT EKTTEKEISD DEDDEPKKEQ EGDIEEVDED KEKEKGKKKK IKEVSHEWQL INKQKPIWLR KPEEITKEEY AAFYKSLTND WEEHLAVKHF
301: SVEGQLEFKA ILFVPKRAPF DLFDTRKKMN NIKLYVRRVF IMDNCEELIP EYLGFVKGVV DSDDLPLNIS REMLQQNKIL KVIRKNLVKK CIEMFNEIAE
401: NKEDYNKFYE AFSKNLKLGI HEDSQNRAKL ADLLRYQSTK SGDELTSLKD YVTRMKEGQK DIYYITGESK KAVENSPFLE RLKKKGYEVL FMVDAIDEYA
501: IGQLKEYDGK KLVSVTKEGL KLDDESEEEK KKKEEKKQSF ESLCKVIKDI LGDKVEKVVV SDRIVDSPCC LVTGEYGWTA NMERIMKAQA LKDNSMSSYM
601: SRVEEES

Best Arabidopsis Sequence Match ( AT5G52640.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIRLVPD KSNKTLSIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALQ AGADVSMIGQ FGVGFYSAYL VAEKVVVTTK HNDDEQYVWE SQAGGSFTVT RDVDGEPLGR GTKITLFLKD DQLEYLEERR LKDLVKKHSE
201: FISYPIYLWT EKTTEKEISD DEDEDEPKKE NEGEVEEVDE EKEKDGKKKK KIKEVSHEWE LINKQKPIWL RKPEEITKEE YAAFYKSLTN DWEDHLAVKH
301: FSVEGQLEFK AILFVPKRAP FDLFDTRKKL NNIKLYVRRV FIMDNCEELI PEYLSFVKGV VDSDDLPLNI SRETLQQNKI LKVIRKNLVK KCIEMFNEIA
401: ENKEDYTKFY EAFSKNLKLG IHEDSQNRGK IADLLRYHST KSGDEMTSFK DYVTRMKEGQ KDIFYITGES KKAVENSPFL ERLKKRGYEV LYMVDAIDEY
501: AVGQLKEYDG KKLVSATKEG LKLEDETEEE KKKREEKKKS FENLCKTIKE ILGDKVEKVV VSDRIVDSPC CLVTGEYGWT ANMERIMKAQ ALRDSSMSGY
601: MSSKKTMEIN PDNGIMEELR KRAEADKNDK SVKDLVMLLY ETALLTSGFS LDEPNTFAAR IHRMLKLGLS IDEDENVEED GDMPELEEDA AEESKMEEVD

Arabidopsis Description

HSP90-1Heat shock protein 90-1 [Source:UniProtKB/Swiss-Prot;Acc:P27323]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.