Factsheet for Solyc07g047790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 1
endoplasmic reticulum 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015734	Potato	mitochondrion	97.36	97.36
KRH74006	Soybean	mitochondrion	80.1	80.4
KRH14117	Soybean	mitochondrion	80.35	80.05
GSMUA_Achr10P...	Banana	mitochondrion	76.83	77.22
VIT_12s0057g00670.t01	Wine grape	cytosol	81.36	76.27
AT3G07770.3	Thale cress	mitochondrion	76.2	75.72
CDY35962	Canola	mitochondrion	76.07	75.22
Bra029677.1-P	Field mustard	mitochondrion	68.51	74.93
Bra040027.1-P	Field mustard	mitochondrion	75.82	74.88
CDY22132	Canola	mitochondrion	75.69	74.75
CDY28017	Canola	mitochondrion	73.05	73.7
KXG23570	Sorghum	mitochondrion, plastid	72.54	71.38
Os12t0514500-01	Rice	mitochondrion	72.04	70.53
Zm00001d041719_P001	Maize	mitochondrion	71.79	70.11
TraesCS5A01G101900.2	Wheat	mitochondrion	71.91	69.98
Zm00001d035285_P003	Maize	extracellular	70.53	69.65
TraesCS5B01G106300.1	Wheat	mitochondrion	72.04	69.5
HORVU5Hr1G027910.13	Barley	plastid	72.29	66.13
Solyc05g010670.2.1	Tomato	plastid	62.72	63.28
TraesCS5D01G113700.1	Wheat	mitochondrion, plastid	72.29	59.98
Solyc06g036290.2.1	Tomato	nucleus, plastid	36.9	48.27
Solyc07g065840.2.1	Tomato	nucleus, plastid	40.3	45.78
Solyc12g015880.1.1	Tomato	nucleus	39.8	45.21
Solyc03g007890.2.1	Tomato	cytosol, extracellular, nucleus, plastid	39.67	45.06
Solyc04g081570.2.1	Tomato	plastid	41.06	40.15
Solyc04g081630.1.1	Tomato	cytosol	9.19	27.34

Protein Annotations

Gene3D:1.20.120.790	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140	Gene3D:3.40.50.11260
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HATPase_C	InterPro:HATPase_C_sf
InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890	InterPro:IPR037196
UniProt:K4CEY5	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775
ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF41	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942
SUPFAM:SSF54211	SUPFAM:SSF55874	EnsemblPlantsGene:Solyc07g047790.2	EnsemblPlants:Solyc07g047790.2.1	UniParc:UPI000276AE43	SEG:seg

Description

Heat shock protein 90-6, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G07770) UniProtKB/Swiss-Prot;Acc:F4JFN3]

Coordinates

chr7:-:59004303..59010529

Molecular Weight (calculated)

90435.7 Da

IEP (calculated)

4.980

GRAVY (calculated)

-0.568

Length

794 amino acids

Sequence
(BLAST)

001: MHRLSKRSVK SLVRSSTAAR YRDVAAPISS THFFYQSADA DSKGRWYSVL TSGRCDVIES AKPFKSRNEP FLGCRFESTA AASDTSDSPS EKFEYQAEVS
101: RLMDLIVNSL YSNKEVFLRE LISNASDALD KLRFLGVTEP ELLKDAVDLD IRIQTDKDNG IITITDSGIG MTRQELVDCL GTIAQSGTAK FLKALKDSKD
201: AGADSNLIGQ FGVGFYSAFL VSERVEVSTK SPKSDKQYVW VGEANSSTYT IREETDPAKQ LPRGTRLTLY LKRDDKGYAH PERVEKLVKN YSQFVSFPIY
301: TWQEKGFTKE VEVDEDPSEA KKEGEDETAE KKKKTKKVVE KYWDWELTNE TQPIWLRSPK EVSKEDYNEF YKKTFNEYLE PLASSHFTTE GEVEFRSVLF
401: VPSVSGMGKD DMINPKTKNI RLYVKRVFIS DDFDGELFPR YLSFIKGVVD SNDLPLNVSR EILQESRIVR IMRKRLVRKA FEMIQGIALS ENRDDYEKFW
501: ENFGKHLKLG CIEDRENHKR IAPLLRFFSS QSENEMISLD EYVENMKPDQ NDIYYIASDS VTSARNTPFL EKLLEKDLEV LFLVDPIDEV AVQNLKAFKE
601: KNFVDISKED LDLGDKNEDK EKEIKQEFGQ TCDWIKKRLG DKVASVQISS RLSSSPCVLV SGKFGWSANM ERLMKAQTVG DTSNLDFMRS RRVFEINPEH
701: PIIRTLTEAC RSTPDDEEAL RAIDLLYDAA LVSSGFTPEN PAQLGGKIYE MMNFALAGKW GTVPEYQQQA IQQPHIPETV EAEIVEPGEA GGQK

Best Arabidopsis Sequence Match ( AT3G07770.2 )
(BLAST)

001: MIRLSKRSVS TLLRSGNQSF RIAAAASTSR SSPSATDVKR SDTESRWYSS LTNGQSKNSG SFAQLNMKTN WFMGYRNESS AAASDSSSQA PPPAEKFEYQ
101: AEVSRLMDLI VNSLYSNKEV FLRELISNAS DALDKLRYLS VTNPELSKDA PDLDIRIYAD KENGIITLTD SGIGMTRQEL VDCLGTIAQS GTAKFMKALK
201: DSKDAGGDNN LIGQFGVGFY SAFLVADRVI VSTKSPKSDK QYVWEGEANS SSFTIQEDTD PQSLIPRGTR ITLHLKQEAK NFADPERIQK LVKNYSQFVS
301: FPIYTWQEKG YTKEVEVEDD PTETKKDDQD DQTEKKKKTK KVVERYWDWE LTNETQPIWL RNPKEVTTAE YNEFYRKAFN EYLDPLASSH FTTEGEVEFR
401: SILYVPPVSP SGKDDIVNQK TKNIRLYVKR VFISDDFDGE LFPRYLSFVK GVVDSHDLPL NVSREILQES RIVRIMKKRL VRKAFDMILG ISLSENREDY
501: EKFWDNFGKH LKLGCIEDRE NHKRIAPLLR FFSSQSENDM ISLDEYVENM KPEQKAIYFI ASDSITSAKN APFLEKMLEK GLEVLYLVEP IDEVAVQSLK
601: AYKEKDFVDI SKEDLDLGDK NEEKEAAVKK EFGQTCDWIK KRLGDKVASV QISNRLSSSP CVLVSGKFGW SANMERLMKA QSTGDTISLD YMKGRRVFEI
701: NPDHSIIKNI NAAYNSNPND EDAMRAIDLM YDAALVSSGF TPDNPAELGG KIYEMMDVAL SGKWSSPEVQ PQQQQMAHSH DAETFEAEVV EPVEVDGKK

Arabidopsis Description

HSP90-6Heat shock protein 90-6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JFN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.