CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
endoplasmic reticulum 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14117	Soybean	mitochondrion	95.32	94.6
PGSC0003DMT400015734	Potato	mitochondrion	80.53	80.23
Solyc07g047790.2.1	Tomato	mitochondrion, nucleus, plastid	80.4	80.1
AT3G07770.3	Thale cress	mitochondrion	78.51	77.72
GSMUA_Achr10P...	Banana	mitochondrion	77.12	77.22
VIT_12s0057g00670.t01	Wine grape	cytosol	82.05	76.62
CDY35962	Canola	mitochondrion	77.62	76.46
Bra040027.1-P	Field mustard	mitochondrion	76.99	75.75
CDY22132	Canola	mitochondrion	76.99	75.75
Bra029677.1-P	Field mustard	mitochondrion	69.41	75.62
CDY28017	Canola	mitochondrion	74.08	74.46
Os12t0514500-01	Rice	mitochondrion	73.32	71.52
KXG23570	Sorghum	mitochondrion, plastid	72.57	71.13
Zm00001d035285_P003	Maize	extracellular	71.68	70.52
Zm00001d041719_P001	Maize	mitochondrion	72.06	70.11
TraesCS5A01G101900.2	Wheat	mitochondrion	72.19	69.98
TraesCS5B01G106300.1	Wheat	mitochondrion	72.44	69.62
HORVU5Hr1G027910.13	Barley	plastid	72.57	66.13
KRH71021	Soybean	nucleus	65.11	64.86
KRH75182	Soybean	plastid	64.48	64.31
TraesCS5D01G113700.1	Wheat	mitochondrion, plastid	72.69	60.08
KRG89657	Soybean	cytosol	6.7	47.75
KRH38373	Soybean	nucleus	40.2	45.49
KRH08858	Soybean	nucleus	39.95	45.21
KRH46427	Soybean	nucleus	39.57	44.78
KRG98439	Soybean	nucleus	39.7	44.73
KRH14196	Soybean	endoplasmic reticulum, nucleus	39.57	44.71
KRH73936	Soybean	endoplasmic reticulum, nucleus	39.57	44.59
KRH33083	Soybean	cytosol	15.55	43.77
KRH04730	Soybean	cytosol	19.09	41.94
KRH05964	Soybean	endoplasmic reticulum	42.6	41.4
KRH17444	Soybean	nucleus	42.6	39.79
KRH41482	Soybean	mitochondrion	32.24	38.93
KRH05319	Soybean	endoplasmic reticulum	15.8	38.7
KRG94627	Soybean	cytosol	14.54	36.98
KRH50203	Soybean	cytosol	12.14	31.58

Protein Annotations

Gene3D:1.20.120.790	EntrezGene:100794913	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140
Gene3D:3.40.50.11260	EMBL:ACUP02001293	EnsemblPlantsGene:GLYMA_02G305600	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N
InterPro:Hsp90_fam	UniProt:I1JJQ4	InterPro:IPR036890	InterPro:IPR037196	EnsemblPlants:KRH74006	ProteinID:KRH74006
ProteinID:KRH74006.1	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775
ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF41	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF110942	SUPFAM:SSF54211
SUPFAM:SSF55874	UniParc:UPI000233767D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:48034339..48039586

Molecular Weight (calculated)

89721.0 Da

IEP (calculated)

5.000

GRAVY (calculated)

-0.550

Length

791 amino acids

Sequence
(BLAST)

001: MLQRLSSTTT RSSSVSALLR YGGGALRRDV LAPISSPHLA KVGENDSKAA RWFSIMSSDK SSNLKRGLLL GKRYESTTAA ESSSPPAERY EYQAEVSRLM
101: DLIVNSLYSN KEVFLRELIS NASDALDKLR FLSVTESGLL KDAVDFDIRI QADKDNGIIT ITDTGIGMTR QELVDCLGTI AQSGTAKFLK ALKDSKDAGG
201: DNNLIGQFGV GFYSAFLVSD RVVVSTKSPK SDKQYVWEGE ANASSYTISE ETDPEKLIPR GTRLTLYLKR DDKVFAHPER IEKLVKNYSQ FVSFPIYTWQ
301: EKGYTKEVEV DDDTTTEGKK DDQDDKTEKK KKTKTVVERY WDWELTNETQ PIWLRNPKEV TKEEYNEFYK KTFNEYLEPL ASSHFTTEGE VEFRSILYVP
401: AFAPSGKDDI INPKTKNIRL FVKRVFISDD FDGELFPRYL SFVKGVVDSN DLPLNVSREI LQESRVVRIM RKRLVRKAFD MILGISMSEN REDYEKFWEN
501: FGKHLKLGCI EDRENHKRIA PLLRFFSSQS DEELIGLDEY VENMKPDQKD IYYIAADSVT SAKNTPFLEK LAEKDLEVLF LVDPIDEVAI QNLKSYKEKN
601: FVDISKEDLD LGDKNEEKEK EMKQEFGQTC DWIKKRLGDK VASVQISNRL SSSPCVLVSG KFGWSANMER LMKAQSMGDA SSLEFMRSRR VFEINPDHSI
701: IRNLDAAFKT NSDDEDALRA IDLLYDAALV SSGFTPDNPA QLGGKIYEMM GMALTGKWST PGQFQSTVNQ PHTPEIVEAE VVEPTEAGGQ K

Best Arabidopsis Sequence Match ( AT3G07770.2 )
(BLAST)

001: MIRLSKRSVS TLLRSGNQSF RIAAAASTSR SSPSATDVKR SDTESRWYSS LTNGQSKNSG SFAQLNMKTN WFMGYRNESS AAASDSSSQA PPPAEKFEYQ
101: AEVSRLMDLI VNSLYSNKEV FLRELISNAS DALDKLRYLS VTNPELSKDA PDLDIRIYAD KENGIITLTD SGIGMTRQEL VDCLGTIAQS GTAKFMKALK
201: DSKDAGGDNN LIGQFGVGFY SAFLVADRVI VSTKSPKSDK QYVWEGEANS SSFTIQEDTD PQSLIPRGTR ITLHLKQEAK NFADPERIQK LVKNYSQFVS
301: FPIYTWQEKG YTKEVEVEDD PTETKKDDQD DQTEKKKKTK KVVERYWDWE LTNETQPIWL RNPKEVTTAE YNEFYRKAFN EYLDPLASSH FTTEGEVEFR
401: SILYVPPVSP SGKDDIVNQK TKNIRLYVKR VFISDDFDGE LFPRYLSFVK GVVDSHDLPL NVSREILQES RIVRIMKKRL VRKAFDMILG ISLSENREDY
501: EKFWDNFGKH LKLGCIEDRE NHKRIAPLLR FFSSQSENDM ISLDEYVENM KPEQKAIYFI ASDSITSAKN APFLEKMLEK GLEVLYLVEP IDEVAVQSLK
601: AYKEKDFVDI SKEDLDLGDK NEEKEAAVKK EFGQTCDWIK KRLGDKVASV QISNRLSSSP CVLVSGKFGW SANMERLMKA QSTGDTISLD YMKGRRVFEI
701: NPDHSIIKNI NAAYNSNPND EDAMRAIDLM YDAALVSSGF TPDNPAELGG KIYEMMDVAL SGKWSSPEVQ PQQQQMAHSH DAETFEAEVV EPVEVDGKK

Arabidopsis Description

HSP90-6Heat shock protein 90-6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JFN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.