CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
endoplasmic reticulum 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75182	Soybean	plastid	97.36	97.48
VIT_01s0010g00680.t01	Wine grape	plastid	85.39	85.61
Bra026525.1-P	Field mustard	cytosol	58.82	85.22
CDY66280	Canola	cytosol	23.8	84.75
AT2G04030.1	Thale cress	plastid	82.37	83.85
CDY33122	Canola	plastid	82.62	83.78
GSMUA_Achr3P28100_001	Banana	plastid	84.0	83.58
CDY66279	Canola	mitochondrion	46.1	83.56
CDX83528	Canola	plastid	81.86	83.01
PGSC0003DMT400050556	Potato	cytosol, plastid	83.25	82.94
Bra025142.1-P	Field mustard	plastid	81.99	82.72
CDY48069	Canola	plastid	81.99	82.72
CDY04167	Canola	plastid	79.47	82.59
Solyc05g010670.2.1	Tomato	plastid	81.61	82.34
Bra017360.1-P	Field mustard	plastid	79.85	82.12
GSMUA_Achr9P22700_001	Banana	plastid	81.99	81.78
EES14330	Sorghum	plastid	79.6	80.2
TraesCS5B01G249000.2	Wheat	plastid	78.59	79.9
HORVU5Hr1G070720.1	Barley	plastid	78.34	79.85
TraesCS5A01G251000.1	Wheat	plastid	78.46	79.77
Zm00001d020827_P001	Maize	mitochondrion	79.97	79.67
Zm00001d052809_P002	Maize	plastid	78.97	79.07
CDX99788	Canola	plastid	67.51	77.91
Os09t0474300-01	Rice	plastid	61.08	74.16
KRH74006	Soybean	mitochondrion	64.86	65.11
KRH14117	Soybean	mitochondrion	65.11	64.87
KRG89657	Soybean	cytosol	7.3	52.25
KRH46427	Soybean	nucleus	41.18	46.78
KRH38373	Soybean	nucleus	41.06	46.64
KRG98439	Soybean	nucleus	41.18	46.58
KRH08858	Soybean	nucleus	40.68	46.21
KRH14196	Soybean	endoplasmic reticulum, nucleus	40.55	46.0
KRH73936	Soybean	endoplasmic reticulum, nucleus	40.55	45.87
KRH04730	Soybean	cytosol	20.53	45.28
KRH33083	Soybean	cytosol	15.24	43.06
KRH05964	Soybean	endoplasmic reticulum	42.7	41.65
KRH17444	Soybean	nucleus	43.2	40.5
KRH41482	Soybean	mitochondrion	32.87	39.85
KRH05319	Soybean	endoplasmic reticulum	16.12	39.63
KRG94627	Soybean	cytosol	13.73	35.05
KRH50203	Soybean	cytosol	12.22	31.91

Protein Annotations

Gene3D:1.20.120.790	EntrezGene:100819778	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140
Gene3D:3.40.50.11260	EMBL:ACUP02000842	EnsemblPlantsGene:GLYMA_02G124500	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N
InterPro:Hsp90_fam	UniProt:I1JEL6	InterPro:IPR036890	InterPro:IPR037196	EnsemblPlants:KRH71021	ProteinID:KRH71021
ProteinID:KRH71021.1	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775
ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF41	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942
SUPFAM:SSF54211	SUPFAM:SSF55874	UniParc:UPI0002337947	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:12445411..12453687

Molecular Weight (calculated)

90096.2 Da

IEP (calculated)

4.617

GRAVY (calculated)

-0.560

Length

794 amino acids

Sequence
(BLAST)

001: MAPVLSRTMA TASLASLPPS SPFARTSLLR SAFLPPQIGL GRNCFSPAAG LRWTQQRREG RRGGLTVRCE AAVAEKDEAT GEKFEYQAEV SRLLDLIVHS
101: LYSHKEVFLR ELVSNASDAL DKLRFLSVTE PSLLGDAGDL EIRIKSDPDN GTITITDTGI GMTKEELIDC LGTIAQSGTS KFLKALKENK DLGADNGLIG
201: QFGVGFYSAF LVAERVVVST KSPRSDKQYV WEAEADSSSY VIKEETDPEK VLRRGTQITL YLREDDKYEF SEPSRIQGLV KNYSQFVSFP IYTWQEKSRT
301: VEVEEEEEPK EGEEPKEEGE KKKVKKTKTE KYWDWELANE TKPIWMRNPK EVEKEEYNEF YKKTFSEFLE PLAHTHFTTE GEVEFRSILY VPGMGPLNNE
401: EVVNPKTKNI RLYVKRVFIS DDFDGELFPR YLSFVKGVVD SDDLPLNVSR EILQESRIVR IMRKRLVRKA FDMIQDLAES ENKEDYKKFW ENFGRFIKLG
501: CIEDTGNHKR ITPLLRFYTS KSEEELKSLD DYVENMGENQ KAIFYLATDS LKSAKTAPFL EKLVQKDIEV LYLVEPIDEV AIQNLQTYKE KKFVDISKED
601: LELGDEDEVK ERENKQEYNL LCDWIKQQLG DKVAKVQISN RLSSSPCVLV SGKFGWSANM ERLMKAQALG DTASLEFMRG RRILEINADH PIIKDLSAAC
701: KNAPDSSEAK RAVDLLYDTA LISSGFSPDS PAELGNKIYE MMALALGGRW GRSEEEEGDA SVEAADSSTS EESSEPEVYE PSEVIAESDP WTTD

Best Arabidopsis Sequence Match ( AT2G04030.1 )
(BLAST)

001: MAPALSRSLY TSPLTSVPIT PVSSRLSHLR SSFLPHGGAL RTGVSCSWNL EKRCNRFAVK CDAAVAEKET TEEGSGEKFE YQAEVSRLLD LIVHSLYSHK
101: EVFLRELVSN ASDALDKLRF LSVTEPSLLG DGGDLEIRIK PDPDNGTITI TDTGIGMTKE ELIDCLGTIA QSGTSKFLKA LKENKDLGAD NGLIGQFGVG
201: FYSAFLVAEK VVVSTKSPKS DKQYVWESVA DSSSYLIREE TDPDNILRRG TQITLYLRED DKYEFAESTR IKNLVKNYSQ FVGFPIYTWQ EKSRTIEVEE
301: DEPVKEGEEG EPKKKKTTKT EKYWDWELAN ETKPLWMRNS KEVEKGEYNE FYKKAFNEFL DPLAHTHFTT EGEVEFRSIL YIPGMGPLNN EDVTNPKTKN
401: IRLYVKRVFI SDDFDGELFP RYLSFVKGVV DSDDLPLNVS REILQESRIV RIMRKRLIRK TFDMIQEISE SENKEDYKKF WENFGRFLKL GCIEDTGNHK
501: RITPLLRFFS SKNEEELTSL DDYIENMGEN QKAIYYLATD SLKSAKSAPF LEKLIQKDIE VLYLVEPIDE VAIQNLQTYK EKKFVDISKE DLELGDEDEV
601: KDREAKQEFN LLCDWIKQQL GDKVAKVQVS NRLSSSPCVL VSGKFGWSAN MERLMKAQAL GDTSSLEFMR GRRILEINPD HPIIKDLNAA CKNAPESTEA
701: TRVVDLLYDT AIISSGFTPD SPAELGNKIY EMMAMAVGGR WGRVEEEEES STVNEGDDKS GETEVVEPSE VRAESDPWQD

Arabidopsis Description

HSP90-5HSP90.5 [Source:UniProtKB/TrEMBL;Acc:A0A178VPV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.