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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 6
  • endoplasmic reticulum 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:endoplasmic reticulum
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:endoplasmic reticulum
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
 plastid: 20363867
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400050556 Potato cytosol, plastid 97.84 96.61
VIT_01s0010g00680.t01 Wine grape plastid 83.1 82.58
KRH71021 Soybean nucleus 82.34 81.61
Bra026525.1-P Field mustard cytosol 56.8 81.57
CDY66279 Canola mitochondrion 45.24 81.28
KRH75182 Soybean plastid 81.45 80.83
AT2G04030.1 Thale cress plastid 80.05 80.77
CDX83528 Canola plastid 79.92 80.33
Bra025142.1-P Field mustard plastid 79.92 79.92
CDY48069 Canola plastid 79.92 79.92
GSMUA_Achr3P28100_001 Banana plastid 80.94 79.82
CDY33122 Canola plastid 79.16 79.57
CDY04167 Canola plastid 76.49 78.8
Bra017360.1-P Field mustard plastid 77.26 78.76
GSMUA_Achr9P22700_001 Banana plastid 79.03 78.14
CDY66280 Canola cytosol 21.98 77.58
TraesCS5B01G249000.2 Wheat plastid 76.24 76.82
Zm00001d020827_P001 Maize mitochondrion 77.76 76.79
HORVU5Hr1G070720.1 Barley plastid 75.98 76.77
TraesCS5A01G251000.1 Wheat plastid 76.11 76.7
EES14330 Sorghum plastid 76.75 76.65
Zm00001d052809_P002 Maize plastid 75.98 75.41
CDX99788 Canola plastid 65.57 75.0
Os09t0474300-01 Rice plastid 59.59 71.71
Solyc07g047790.2.1 Tomato mitochondrion, nucleus, plastid 63.28 62.72
Solyc06g036290.2.1 Tomato nucleus, plastid 37.99 49.26
Solyc03g007890.2.1 Tomato cytosol, extracellular, nucleus, plastid 41.68 46.92
Solyc07g065840.2.1 Tomato nucleus, plastid 41.04 46.21
Solyc12g015880.1.1 Tomato nucleus 40.79 45.92
Solyc04g081570.2.1 Tomato plastid 42.06 40.76
Solyc04g081630.1.1 Tomato cytosol 9.02 26.59
Protein Annotations
Gene3D:1.20.120.790MapMan:19.1.6.1Gene3D:3.30.230.80Gene3D:3.30.565.10Gene3D:3.30.70.2140Gene3D:3.40.50.11260
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005773GO:GO:0005774
GO:GO:0006457GO:GO:0006810GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0009408
GO:GO:0009414GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009628GO:GO:0009651
GO:GO:0009704GO:GO:0009791GO:GO:0009941GO:GO:0009987GO:GO:0010157GO:GO:0016020
GO:GO:0042803GO:GO:0045037GO:GO:0051082InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HSP90_C
InterPro:Heat_shock_protein_90_CSInterPro:Hsp90_NInterPro:Hsp90_famInterPro:IPR036890InterPro:IPR037196UniProt:K4BXN9
HAMAP:MF_00505PFAM:PF00183PFAM:PF02518PIRSF:PIRSF002583PRINTS:PR00775ScanProsite:PS00298
PANTHER:PTHR11528PANTHER:PTHR11528:SF41InterPro:Ribosomal_S5_D2-typ_foldSMART:SM00387SUPFAM:SSF110942SUPFAM:SSF54211
SUPFAM:SSF55874EnsemblPlantsGene:Solyc05g010670.2EnsemblPlants:Solyc05g010670.2.1UniParc:UPI00027671DFSEG:seg:
Description
Heat shock protein 90-5, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G04030) UniProtKB/Swiss-Prot;Acc:Q9SIF2]
Coordinates
chr5:-:4883167..4891847
Molecular Weight (calculated)
89733.0 Da
IEP (calculated)
4.651
GRAVY (calculated)
-0.552
Length
787 amino acids
Sequence
(BLAST)
001: MAPVVSRSLT SSPMASVPYS PSFVLGSGST NRVCLKTTFL PRNNIKNGFL QSGLRWKQDK RDVGVVVRCE ASAVAEKEAS ETSGETHEYQ AEVSRLMDLI
101: VHSLYSHKEV FLRELVSNAS DALDKLRFLS LTEPSLLGDS SELEIRIKPD PDNGTVTITD TGIGMTKEEL IDCLGTIAQS GTSKFLKALK ENKDLGADNG
201: LIGQFGVGFY SAFLVAQKVV VSTKSPRSDK QFVWEAEADS SSYVIREETN PENLLTRGTQ ITLYLRDDDK YEYCEPKKIQ DLVKNYSQFV SFPIYTWQEK
301: SRTIEVEEEE EPKEGEEKTE EEKKMTKKTK TEKYFDWELT NETKPIWMRN PKEVEKEQYQ EFYKRTFNEF LDPLAHTHFT TEGEVEFRSV LYIPGMAPLN
401: NEDVVNPKTK NIRLYVKRVF ISDDFDGELF PRYLSFVKGV VDSNDLPLNV SREILQESRI VRIMRKRLVR KTFDMIQDLS ESENKEDYKK FWENFGKFVK
501: LGCIEDTGNH KRITPLLRFF SSKSEEELIS LDDYVENMGE NQKAIYYLAT DSLQSARTAP FLEKLVQKGI EVLYLVEPID EVAIQNLQTY KEKKFVDISK
601: EDLELDDDDE VKDREAKQEY NLLCDWIKQQ LGDKVAKVQV SKRLSSSPCV LVSGKFGWSA NMERLMRAQT LGDTSTLEFM RGRRILEVNP DHPIIKDLNA
701: ACRKSPDSSD AKRAVELLFD TALISSGFTP DSPAELGGKI YEMMAMALGG RWGRFEEEET EASEETSIES DASSAEVVEP QVVEPSE
Best Arabidopsis Sequence Match ( AT2G04030.1 )
(BLAST)
001: MAPALSRSLY TSPLTSVPIT PVSSRLSHLR SSFLPHGGAL RTGVSCSWNL EKRCNRFAVK CDAAVAEKET TEEGSGEKFE YQAEVSRLLD LIVHSLYSHK
101: EVFLRELVSN ASDALDKLRF LSVTEPSLLG DGGDLEIRIK PDPDNGTITI TDTGIGMTKE ELIDCLGTIA QSGTSKFLKA LKENKDLGAD NGLIGQFGVG
201: FYSAFLVAEK VVVSTKSPKS DKQYVWESVA DSSSYLIREE TDPDNILRRG TQITLYLRED DKYEFAESTR IKNLVKNYSQ FVGFPIYTWQ EKSRTIEVEE
301: DEPVKEGEEG EPKKKKTTKT EKYWDWELAN ETKPLWMRNS KEVEKGEYNE FYKKAFNEFL DPLAHTHFTT EGEVEFRSIL YIPGMGPLNN EDVTNPKTKN
401: IRLYVKRVFI SDDFDGELFP RYLSFVKGVV DSDDLPLNVS REILQESRIV RIMRKRLIRK TFDMIQEISE SENKEDYKKF WENFGRFLKL GCIEDTGNHK
501: RITPLLRFFS SKNEEELTSL DDYIENMGEN QKAIYYLATD SLKSAKSAPF LEKLIQKDIE VLYLVEPIDE VAIQNLQTYK EKKFVDISKE DLELGDEDEV
601: KDREAKQEFN LLCDWIKQQL GDKVAKVQVS NRLSSSPCVL VSGKFGWSAN MERLMKAQAL GDTSSLEFMR GRRILEINPD HPIIKDLNAA CKNAPESTEA
701: TRVVDLLYDT AIISSGFTPD SPAELGNKIY EMMAMAVGGR WGRVEEEEES STVNEGDDKS GETEVVEPSE VRAESDPWQD
Arabidopsis Description
HSP90-5HSP90.5 [Source:UniProtKB/TrEMBL;Acc:A0A178VPV7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.