CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74006	Soybean	mitochondrion	94.6	95.32
PGSC0003DMT400015734	Potato	mitochondrion	80.43	80.73
Solyc07g047790.2.1	Tomato	mitochondrion, nucleus, plastid	80.05	80.35
AT3G07770.3	Thale cress	mitochondrion	77.92	77.72
VIT_12s0057g00670.t01	Wine grape	cytosol	81.68	76.86
GSMUA_Achr10P...	Banana	mitochondrion	75.78	76.46
CDY35962	Canola	mitochondrion	76.91	76.34
Bra040027.1-P	Field mustard	mitochondrion	76.54	75.87
CDY22132	Canola	mitochondrion	76.54	75.87
Bra029677.1-P	Field mustard	mitochondrion	68.88	75.62
CDY28017	Canola	mitochondrion	73.27	74.21
KXG23570	Sorghum	mitochondrion, plastid	72.02	71.13
Os12t0514500-01	Rice	mitochondrion	72.27	71.02
Zm00001d035285_P003	Maize	extracellular	71.14	70.52
Zm00001d041719_P001	Maize	mitochondrion	71.39	69.99
TraesCS5A01G101900.2	Wheat	mitochondrion	71.52	69.85
TraesCS5B01G106300.1	Wheat	mitochondrion	71.77	69.5
HORVU5Hr1G027910.13	Barley	plastid	71.77	65.9
KRH71021	Soybean	nucleus	64.87	65.11
KRH75182	Soybean	plastid	64.12	64.44
TraesCS5D01G113700.1	Wheat	mitochondrion, plastid	72.02	59.98
KRG89657	Soybean	cytosol	6.52	46.85
KRH38373	Soybean	nucleus	40.4	46.07
KRH08858	Soybean	nucleus	40.15	45.78
KRH14196	Soybean	endoplasmic reticulum, nucleus	39.77	45.29
KRH46427	Soybean	nucleus	39.65	45.21
KRH73936	Soybean	endoplasmic reticulum, nucleus	39.77	45.16
KRG98439	Soybean	nucleus	39.77	45.16
KRH33083	Soybean	cytosol	15.81	44.84
KRH04730	Soybean	cytosol	19.32	42.78
KRH05964	Soybean	endoplasmic reticulum	43.41	42.51
KRH17444	Soybean	nucleus	43.41	40.85
KRH05319	Soybean	endoplasmic reticulum	16.06	39.63
KRH41482	Soybean	mitochondrion	32.25	39.24
KRG94627	Soybean	cytosol	14.81	37.94
KRH50203	Soybean	cytosol	12.05	31.58

Protein Annotations

Gene3D:1.20.120.790	EntrezGene:100806710	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140
Gene3D:3.40.50.11260	UniProt:A0A0R0GHB3	EMBL:ACUP02008492	EnsemblPlantsGene:GLYMA_14G007700	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS
InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890	InterPro:IPR037196	EnsemblPlants:KRH14117	ProteinID:KRH14117
ProteinID:KRH14117.1	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775
ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF41	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF110942	SUPFAM:SSF54211
SUPFAM:SSF55874	UniParc:UPI0006EDAE2D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:600842..606096

Molecular Weight (calculated)

90507.6 Da

IEP (calculated)

4.876

GRAVY (calculated)

-0.575

Length

797 amino acids

Sequence
(BLAST)

001: MMQRLSSATT TTTTRSALLR YGGGALRRDV LAPISSSHLA AKSQAGENDT KAARWFSIMS SDRSTFDSSN LKRDLFFGKR YESTAAESSS SAAAERYEYQ
101: AEVSRLMDLI VNSLYSNKEV FLRELISNAS DALDKLRFLS VTEPGLLKEA VDFDIRIQAD KDNGIISITD TGIGMTRQEL VDCLGTIAQS GTAKFLKALK
201: DSKDAGGDNN LIGQFGVGFY SAFLVSDRVV VSTKSPKSDK QYVWEGEANA SSYTISEETD PEKLIPRGTR LTLYLKRDDK GFAHPERIEK LVKNYSQFVS
301: FPIYTWQEKG YTKEVEVDED TAEDKKDDQD DKTEKKKKTK TVVERYWDWE LTNDTQPIWL RNPKEVTKEE YNEFYKKTFN EYLEPLASSH FTTEGEVEFR
401: SILYVPAFAP SGKDDIINPK TKNIRLFVKR VFISDDFDGE LFPRYLSFVK GVVDSNDLPL NVSREILQES RIVRIMRKRL VRKAFDMILG ISMSENKEDY
501: EKFWENFGKH LKLGCIEDRE NHKRIAPLLR FFSSQSDEEL ISLDEYVENM KPDQKDIYYI AADSVTSAKN TPFLEKLAEK DLEVLFLVDP IDEVAIQNLK
601: SYKEKNFVDI SKEDLDLGDK NEEKEKEMKQ EFGQTCDWIK KRLGDKVASV QISNRLSSSP CVLVSGKFGW SANMERLMKA QSMGDASSLE FMRSRRVFEI
701: NPDHSIIRNL DDAFKTNPDD EDALRAIDLL YDAALVSSGF TPDNPAQLGG KIYEMMGMAL TGKWSTPGQF QSTVTQPHTP ETLEAEVVEP TEAGGQK

Best Arabidopsis Sequence Match ( AT3G07770.2 )
(BLAST)

001: MIRLSKRSVS TLLRSGNQSF RIAAAASTSR SSPSATDVKR SDTESRWYSS LTNGQSKNSG SFAQLNMKTN WFMGYRNESS AAASDSSSQA PPPAEKFEYQ
101: AEVSRLMDLI VNSLYSNKEV FLRELISNAS DALDKLRYLS VTNPELSKDA PDLDIRIYAD KENGIITLTD SGIGMTRQEL VDCLGTIAQS GTAKFMKALK
201: DSKDAGGDNN LIGQFGVGFY SAFLVADRVI VSTKSPKSDK QYVWEGEANS SSFTIQEDTD PQSLIPRGTR ITLHLKQEAK NFADPERIQK LVKNYSQFVS
301: FPIYTWQEKG YTKEVEVEDD PTETKKDDQD DQTEKKKKTK KVVERYWDWE LTNETQPIWL RNPKEVTTAE YNEFYRKAFN EYLDPLASSH FTTEGEVEFR
401: SILYVPPVSP SGKDDIVNQK TKNIRLYVKR VFISDDFDGE LFPRYLSFVK GVVDSHDLPL NVSREILQES RIVRIMKKRL VRKAFDMILG ISLSENREDY
501: EKFWDNFGKH LKLGCIEDRE NHKRIAPLLR FFSSQSENDM ISLDEYVENM KPEQKAIYFI ASDSITSAKN APFLEKMLEK GLEVLYLVEP IDEVAVQSLK
601: AYKEKDFVDI SKEDLDLGDK NEEKEAAVKK EFGQTCDWIK KRLGDKVASV QISNRLSSSP CVLVSGKFGW SANMERLMKA QSTGDTISLD YMKGRRVFEI
701: NPDHSIIKNI NAAYNSNPND EDAMRAIDLM YDAALVSSGF TPDNPAELGG KIYEMMDVAL SGKWSSPEVQ PQQQQMAHSH DAETFEAEVV EPVEVDGKK

Arabidopsis Description

HSP90-6Heat shock protein 90-6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JFN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.