Factsheet for VIT_12s0057g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74006	Soybean	mitochondrion	76.62	82.05
PGSC0003DMT400015734	Potato	mitochondrion	76.74	81.86
KRH14117	Soybean	mitochondrion	76.86	81.68
Solyc07g047790.2.1	Tomato	mitochondrion, nucleus, plastid	76.27	81.36
AT3G07770.3	Thale cress	mitochondrion	73.32	77.72
GSMUA_Achr10P...	Banana	mitochondrion	71.9	77.09
CDY35962	Canola	mitochondrion	72.96	76.96
Bra040027.1-P	Field mustard	mitochondrion	72.73	76.62
Bra029677.1-P	Field mustard	mitochondrion	65.64	76.58
CDY22132	Canola	mitochondrion	72.61	76.49
CDY28017	Canola	mitochondrion	69.89	75.22
Os12t0514500-01	Rice	mitochondrion	70.13	73.24
KXG23570	Sorghum	mitochondrion, plastid	69.78	73.23
Zm00001d041719_P001	Maize	mitochondrion	69.78	72.69
TraesCS5A01G101900.2	Wheat	mitochondrion	70.01	72.67
TraesCS5B01G106300.1	Wheat	mitochondrion	70.37	72.42
Zm00001d035285_P003	Maize	extracellular	68.48	72.14
HORVU5Hr1G027910.13	Barley	plastid	70.96	69.24
VIT_01s0010g00680.t01	Wine grape	plastid	61.16	65.4
TraesCS5D01G113700.1	Wheat	mitochondrion, plastid	71.19	63.01
VIT_02s0025g00280.t01	Wine grape	cytosol	37.43	45.09
VIT_00s2341g00010.t01	Wine grape	cytosol	2.6	44.9
VIT_16s0050g01150.t01	Wine grape	cytosol	37.07	44.6
VIT_14s0083g01230.t01	Wine grape	cytosol	2.83	44.44
VIT_00s0194g00030.t01	Wine grape	cytosol	36.36	44.06
VIT_19s0015g01090.t01	Wine grape	cytosol	35.89	43.18
VIT_18s0001g14500.t01	Wine grape	endoplasmic reticulum	39.55	40.95
VIT_13s0106g00410.t01	Wine grape	cytosol	5.67	39.34
VIT_08s0007g05760.t01	Wine grape	cytosol	2.72	32.86
VIT_05s0062g00690.t01	Wine grape	cytosol	8.62	30.17
VIT_00s1569g00010.t01	Wine grape	cytosol	3.31	26.67
VIT_05s0094g00110.t01	Wine grape	nucleus, peroxisome, plastid	7.67	24.25
VIT_00s0131g00250.t01	Wine grape	cytosol	4.84	19.52

Protein Annotations

Gene3D:1.20.120.790	EntrezGene:100258010	wikigene:100258010	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10
Gene3D:3.30.70.2140	Gene3D:3.40.50.11260	ProteinID:CCB51721	ProteinID:CCB51721.1	UniProt:F6HHM5	EMBL:FN595759
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HATPase_C	InterPro:HATPase_C_sf
InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890	InterPro:IPR037196
EntrezGene:LOC100258010	wikigene:LOC100258010	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583
PRINTS:PR00775	ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF41	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF110942
SUPFAM:SSF54211	SUPFAM:SSF55874	TIGR:TC69115	UniParc:UPI0002108D9D	ArrayExpress:VIT_12s0057g00670	EnsemblPlantsGene:VIT_12s0057g00670
EnsemblPlants:VIT_12s0057g00670.t01	RefSeq:XP_002270014	RefSeq:XP_002270014.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:9297483..9304251

Molecular Weight (calculated)

96203.8 Da

IEP (calculated)

5.303

GRAVY (calculated)

-0.564

Length

847 amino acids

Sequence
(BLAST)

001: MEIVNASPEA SSTRLQNPTK TLERPNPHFI YLVSEQKVYQ SLHFQLPAMH RLSRRSIAVL RTTGAARRTA PAPITPASPF NDSVGQNDAK LRWYSVLASG
101: RSDAGRNSTQ LNLRNGLLLG NRYESTAAAS DASDPPAEKF EYQAEVSRLM DLIVHSLYSN KEVFLRELIR HVTSYYNASD ALDKLRFLSV TEPQLLKDGL
201: DLDIRIQTDK DNGIIHLTDS GIGMTRQELV DCLGTIAQSG TAKFLKAVKE SKDSGADSNL IGQFGVGFYS AFLVSDRVVV STKSPKSDKQ YVWEGKADAS
301: SYTIREETDP EKLIPRGTRL TLYLKRDDKD FAHPERVQKL VKNYSQFVSF PIYTWQEKGY TKEVEVEEDP AEAKKDEQDE KAEKKKKTKT VVERYWDWEQ
401: TNETQPIWLR NPKEVSTEEY NEFYKKAFNE YLDPLASSHF TTEGEVEFRS ILYVPAIAPM GKEDIVNPKT KNIRLYVKRV FISDDFDGEL FPRYLSFVKG
501: VVDSNDLPLN VSREILQESR IVRIMRKRLV RKAFDMILGI SLSENREDYE KFWENFGKHL KLGCIEDREN HKRLAPLLRF FSSQSENEMI SLDEYVENMK
601: LEQKDIYYIA SDSVTSARNT PFLEKLLEKD LEVLFLVDPI DEVAITNLKS YKEKNFVDIS KEDLDIGDKS EEKEKEMKQE FGQTCDWIKK RLGDKVASVQ
701: ISNRLSTSPC VLVSGKFGWS ANMERLMKAQ AVGDTSSLDF MRGRRVFEIN PEHPIIKNLN AACKSGPDDE EALRAIDLLY DTALISSGFT PENPAQLGGK
801: IYEMMGMALS GKWASPDAGS QVPAAEPNNT QTLEAEVVEP VEAGNQK

Best Arabidopsis Sequence Match ( AT3G07770.2 )
(BLAST)

001: MIRLSKRSVS TLLRSGNQSF RIAAAASTSR SSPSATDVKR SDTESRWYSS LTNGQSKNSG SFAQLNMKTN WFMGYRNESS AAASDSSSQA PPPAEKFEYQ
101: AEVSRLMDLI VNSLYSNKEV FLRELISNAS DALDKLRYLS VTNPELSKDA PDLDIRIYAD KENGIITLTD SGIGMTRQEL VDCLGTIAQS GTAKFMKALK
201: DSKDAGGDNN LIGQFGVGFY SAFLVADRVI VSTKSPKSDK QYVWEGEANS SSFTIQEDTD PQSLIPRGTR ITLHLKQEAK NFADPERIQK LVKNYSQFVS
301: FPIYTWQEKG YTKEVEVEDD PTETKKDDQD DQTEKKKKTK KVVERYWDWE LTNETQPIWL RNPKEVTTAE YNEFYRKAFN EYLDPLASSH FTTEGEVEFR
401: SILYVPPVSP SGKDDIVNQK TKNIRLYVKR VFISDDFDGE LFPRYLSFVK GVVDSHDLPL NVSREILQES RIVRIMKKRL VRKAFDMILG ISLSENREDY
501: EKFWDNFGKH LKLGCIEDRE NHKRIAPLLR FFSSQSENDM ISLDEYVENM KPEQKAIYFI ASDSITSAKN APFLEKMLEK GLEVLYLVEP IDEVAVQSLK
601: AYKEKDFVDI SKEDLDLGDK NEEKEAAVKK EFGQTCDWIK KRLGDKVASV QISNRLSSSP CVLVSGKFGW SANMERLMKA QSTGDTISLD YMKGRRVFEI
701: NPDHSIIKNI NAAYNSNPND EDAMRAIDLM YDAALVSSGF TPDNPAELGG KIYEMMDVAL SGKWSSPEVQ PQQQQMAHSH DAETFEAEVV EPVEVDGKK

Arabidopsis Description

HSP90-6Heat shock protein 90-6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JFN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.