Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g092780.1.1 | |
| Solyc03g007890.2.1 | |
| Solyc11g072290.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g007670.2.1 | Tomato | cytosol, extracellular | 69.7 | 12.43 |
| Bra035239.1-P | Field mustard | cytosol | 62.12 | 11.55 |
| CDY13243 | Canola | cytosol | 62.12 | 11.52 |
| Bra013710.1-P | Field mustard | cytosol | 56.06 | 11.49 |
| CDX86798 | Canola | cytosol | 62.12 | 11.48 |
| AT4G11260.1 | Thale cress | cytosol | 62.12 | 11.45 |
| Bra000741.1-P | Field mustard | cytosol | 62.12 | 11.45 |
| CDX90794 | Canola | cytosol | 62.12 | 11.42 |
| GSMUA_Achr4P15560_001 | Banana | cytosol | 63.64 | 11.38 |
| Bra019295.1-P | Field mustard | cytosol | 59.09 | 11.37 |
| Zm00001d044172_P002 | Maize | extracellular | 62.12 | 11.36 |
| CDY10946 | Canola | cytosol | 59.09 | 11.34 |
| GSMUA_Achr7P10850_001 | Banana | cytosol | 62.12 | 11.17 |
| CDY05137 | Canola | cytosol | 60.61 | 11.14 |
| AT4G23570.3 | Thale cress | cytosol | 59.09 | 11.11 |
| Zm00001d011401_P001 | Maize | extracellular | 60.61 | 11.08 |
| CDX94203 | Canola | cytosol | 57.58 | 11.05 |
| EES01101 | Sorghum | cytosol | 59.09 | 10.71 |
| CDY44117 | Canola | cytosol | 57.58 | 10.64 |
| GSMUA_Achr7P14290_001 | Banana | cytosol | 59.09 | 10.54 |
| HORVU3Hr1G055920.7 | Barley | cytosol | 56.06 | 9.92 |
| CDY10894 | Canola | cytosol | 53.03 | 9.86 |
| TraesCS3D01G227500.3 | Wheat | golgi | 56.06 | 8.75 |
| TraesCS3B01G255300.1 | Wheat | cytosol | 33.33 | 5.84 |
| CDY71639 | Canola | cytosol, plastid | 7.58 | 4.2 |
| CDY63435 | Canola | cytosol, mitochondrion, nucleus | 16.67 | 3.74 |
| CDY44118 | Canola | endoplasmic reticulum, plastid, vacuole | 9.09 | 2.73 |
| Bra019498.1-P | Field mustard | cytosol, plastid | 9.09 | 2.71 |
| CDY10892 | Canola | endoplasmic reticulum, golgi | 6.06 | 2.12 |
| Solyc06g036420.1.1 | Tomato | cytosol | 7.58 | 1.69 |
| Os01t0624500-01 | Rice | cytosol, nucleus | 0.0 | 0.0 |
| KRG94038 | Soybean | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
| CDY43481 | Canola | cytosol | 0.0 | 0.0 |
| CDY28656 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc06g036410.1.1 | EnsemblPlantsGene:Solyc06g036410.1 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF496 | SUPFAM:SSF48452 | UniParc:UPI0002766129 |
| UniProt:K4C507 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:25974062..25974262
Molecular Weight (calculated)
7364.7 Da
IEP (calculated)
4.811
GRAVY (calculated)
0.014
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MASDLVTKAN EAFIDDHFEL AVDLYSQAIA ITPNNADLFA DRAQANIKLR NFTGNLFVNM IPLHSR
001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY
Arabidopsis Description
SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.