Factsheet for GSMUA_Achr4P15560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P01500_001
GSMUA_Achr8P19130_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	GSMUA_Achr5P01500_001	AT4G37460.1	21798944
AT4G11260.1	GSMUA_AchrUn_...	AT5G51700.1	11847307
AT4G11260.1	GSMUA_AchrUn_...	AT5G51700.1	18065690
AT4G11260.1	GSMUA_Achr8P19130_001	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0624500-01	Rice	cytosol, nucleus	23.04	72.03
GSMUA_Achr7P10850_001	Banana	cytosol	67.21	67.57
VIT_16s0050g01510.t01	Wine grape	cytosol	64.77	66.2
GSMUA_Achr7P14290_001	Banana	cytosol	65.04	64.86
EES01101	Sorghum	cytosol	63.69	64.56
Zm00001d044172_P002	Maize	extracellular	62.6	63.99
KRH35228	Soybean	cytosol	61.79	63.87
Solyc03g007670.2.1	Tomato	cytosol, extracellular	63.96	63.78
Solyc06g036410.1.1	Tomato	cytosol	11.38	63.64
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	63.69	63.51
KRH08815	Soybean	nucleus	61.79	63.51
HORVU3Hr1G055920.7	Barley	cytosol	63.96	63.27
KRH38332	Soybean	cytosol, nucleus	61.52	63.23
Zm00001d011401_P001	Maize	extracellular	61.79	63.16
Bra019295.1-P	Field mustard	cytosol	57.45	61.81
CDY10946	Canola	cytosol	57.45	61.63
CDX94203	Canola	cytosol	56.91	61.05
PGSC0003DMT400074364	Potato	cytosol	61.25	60.92
KRH77588	Soybean	cytosol	58.54	59.83
CDY13243	Canola	cytosol	57.72	59.83
Bra035239.1-P	Field mustard	cytosol	57.45	59.72
CDX90794	Canola	cytosol	57.99	59.61
CDX86798	Canola	cytosol	57.45	59.38
CDY05137	Canola	cytosol	57.18	58.77
AT4G23570.3	Thale cress	cytosol	55.83	58.69
Bra000741.1-P	Field mustard	cytosol	56.91	58.66
Solyc06g036420.1.1	Tomato	cytosol	46.88	58.45
TraesCS3B01G255300.1	Wheat	cytosol	59.08	57.82
Bra013710.1-P	Field mustard	cytosol	50.41	57.76
CDY44117	Canola	cytosol	55.56	57.42
AT4G11260.1	Thale cress	cytosol	55.56	57.26
KRH27885	Soybean	cytosol	57.72	56.95
CDY10894	Canola	cytosol	54.74	56.9
TraesCS3D01G227500.3	Wheat	golgi	64.23	56.03
CDY10892	Canola	endoplasmic reticulum, golgi	27.91	54.5
CDY43481	Canola	cytosol	10.3	54.29
CDY28656	Canola	cytosol	10.3	54.29
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	29.27	49.09
VIT_02s0025g00450.t01	Wine grape	cytosol	41.46	45.27
Bra019498.1-P	Field mustard	cytosol, plastid	26.02	43.44
KRG94038	Soybean	cytosol, mitochondrion, nucleus	8.13	41.1
CDY63435	Canola	cytosol, mitochondrion, nucleus	30.89	38.78
CDY71639	Canola	cytosol, plastid	10.57	32.77
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	21.68	31.62

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.1.6.3	Gene3D:2.60.40.790	InterPro:CS_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G15560_001	EnsemblPlants:GSMUA_Achr4P15560_001	EnsemblPlants:GSMUA_Achr4T15560_001	InterPro:HSP20-like_chaperone
InterPro:IPR007052	InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
UniProt:M0SP71	PFAM:PF04969	PFAM:PF05002	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293
PFscan:PS51048	PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	InterPro:SGS_dom	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002956ACF
SEG:seg	:	:	:	:	:

Description

Putative Suppressor of G2 allele of SKP1 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr4G15560_001]

Coordinates

chr4:+:11747888..11755471

Molecular Weight (calculated)

41282.8 Da

IEP (calculated)

5.544

GRAVY (calculated)

-0.512

Length

369 amino acids

Sequence
(BLAST)

001: MASDLARSAK EAFVDDDFEL AVDLNTRALE LDPANADLYA DRAQANIKLN NFTEAVADAN KAIELAPTMS KAYLRKGTAC IKLEEYQTAK AALEAGFFLA
101: PTDSRFTRLI KECDEHIAEE INRLPKQGAH AASPIAVISS HDGSIGSPKE SVPIHDASCH QSVKVSSKPK YRHDHYNTPT EVVLTIFAKD IPEKYVNIDF
201: GEQIISVTID IPGEDTYLFQ HRLFAKIVPE KCRYEIFSSK IEIRLFKAEA ITWTSLEFSK DKKVVQKVNV SGFADVKSER PSYPSSKTKV DWDKLESEVK
301: KEEKEEKLDG DAALNKLFRD IYQGGDEDMK RAMMKSFVES NGSVLSTNWK DVGSRKVEGT PPDGMEMKK

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.