Factsheet for Bra035239.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001457.1-P
Bra003119.1-P
Bra009583.1-P
Bra011768.1-P
Bra022561.1-P
Bra028270.1-P
Bra035909.1-P
Bra038734.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	Bra001457.1-P	AT3G12580.1	18065690
AT4G11260.1	Bra038734.1-P	AT3G12580.1	18065690
AT4G11260.1	Bra011768.1-P	AT4G37460.1	21798944
AT4G11260.1	Bra009583.1-P	AT5G02500.1	18065690
AT4G11260.1	Bra035909.1-P	AT5G02500.1	18065690
AT4G11260.1	Bra022561.1-P	AT5G51700.1	11847307
AT4G11260.1	Bra028270.1-P	AT5G51700.1	11847307
AT4G11260.1	Bra022561.1-P	AT5G51700.1	18065690
AT4G11260.1	Bra028270.1-P	AT5G51700.1	18065690
AT4G11260.1	Bra003119.1-P	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86798	Canola	cytosol	100.0	99.44
Bra000741.1-P	Field mustard	cytosol	92.96	92.18
AT4G11260.1	Thale cress	cytosol	90.14	89.39
Bra019295.1-P	Field mustard	cytosol	76.9	79.59
Bra013710.1-P	Field mustard	cytosol	66.48	73.29
Os01t0624500-01	Rice	cytosol, nucleus	23.66	71.19
KRH38332	Soybean	cytosol, nucleus	65.07	64.35
Solyc03g007670.2.1	Tomato	cytosol, extracellular	66.76	64.05
KRH08815	Soybean	nucleus	64.23	63.51
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	65.92	63.24
VIT_16s0050g01510.t01	Wine grape	cytosol	63.66	62.6
Solyc06g036410.1.1	Tomato	cytosol	11.55	62.12
KRH77588	Soybean	cytosol	61.97	60.94
PGSC0003DMT400074364	Potato	cytosol	63.1	60.38
KRH35228	Soybean	cytosol	60.56	60.22
GSMUA_Achr7P10850_001	Banana	cytosol	62.25	60.22
Zm00001d044172_P002	Maize	extracellular	61.13	60.11
EES01101	Sorghum	cytosol	61.41	59.89
Zm00001d011401_P001	Maize	extracellular	60.56	59.56
KRH27885	Soybean	cytosol	61.69	58.56
Solyc06g036420.1.1	Tomato	cytosol	48.73	58.45
GSMUA_Achr4P15560_001	Banana	cytosol	59.72	57.45
HORVU3Hr1G055920.7	Barley	cytosol	60.0	57.1
GSMUA_Achr7P14290_001	Banana	cytosol	59.44	57.03
Bra019498.1-P	Field mustard	cytosol, plastid	33.8	54.3
TraesCS3B01G255300.1	Wheat	cytosol	56.06	52.79
TraesCS3D01G227500.3	Wheat	golgi	60.0	50.35
VIT_02s0025g00450.t01	Wine grape	cytosol	45.63	47.93
KRG94038	Soybean	cytosol, mitochondrion, nucleus	9.58	46.58
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	20.85	29.25

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.1.6.3	Gene3D:2.60.40.790	EnsemblPlantsGene:Bra035239	EnsemblPlants:Bra035239.1	EnsemblPlants:Bra035239.1-P
InterPro:CS_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:HSP20-like_chaperone	InterPro:IPR007052
InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4F2E1
PFAM:PF04969	PFAM:PF05002	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PFscan:PS51048
PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	InterPro:SGS_dom	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002546B16	SEG:seg

Description

AT4G11260 (E=6e-166) ATSGT1B, ETA3, RPR1, EDM1, SGT1B | SGT1B; protein binding

Coordinates

chrA08:+:9455609..9457625

Molecular Weight (calculated)

39415.7 Da

IEP (calculated)

4.768

GRAVY (calculated)

-0.467

Length

355 amino acids

Sequence
(BLAST)

001: MASELAEKAK EAFLEDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKIL NFTEAVADAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNESKFNKMI DECNLHIAEE EKDLVQQMPS SSTTPPLATA ADSPPVPSPA APAKPMFRHE FYQKPEEVVV TVFAKGIPKQ NVNVEFGDQI LSVVIDVNGE
201: EAYHFQPRLF GKIIPEKCRY EVLSTKVEIR LAKAETITWA SLEYVKGQAL LPKPNVASAV SQRPVYPSSK PAKDWDKLEA EVKKQEKDEK LDGDAAMNKF
301: FSDIYQSADE DMRRAMNKSF AESNGTVLST NWKEVGTKKV ESTPPDGMEL KKWEY

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.