Factsheet for TraesCS3D01G227500.3

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G285000.2
TraesCS1B01G294300.1
TraesCS1D01G284000.2
TraesCS2A01G033700.1
TraesCS2A01G263200.1
TraesCS2A01G414300.2
TraesCS2B01G047400.1
TraesCS2B01G273000.1
TraesCS2B01G279000.1
TraesCS2B01G433400.1
TraesCS2D01G033200.2
TraesCS2D01G260800.1
TraesCS2D01G411600.1
TraesCS3B01G390700.1
TraesCS3B01G390800.1
TraesCS3D01G351900.1
TraesCS3D01G352400.2
TraesCS4A01G097900.2
TraesCS4B01G206700.1
TraesCS4D01G207500.1
TraesCS6D01G402500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	TraesCS1A01G285000.2	AT3G12580.1	18065690
AT4G11260.1	TraesCS1B01G294300.1	AT3G12580.1	18065690
AT4G11260.1	TraesCS1D01G284000.2	AT3G12580.1	18065690
AT4G11260.1	TraesCS3B01G390700.1	AT3G12580.1	18065690
AT4G11260.1	TraesCS3B01G390800.1	AT3G12580.1	18065690
AT4G11260.1	TraesCS3D01G351900.1	AT3G12580.1	18065690
AT4G11260.1	TraesCS3D01G352400.2	AT3G12580.1	18065690
AT4G11260.1	TraesCS4A01G097900.2	AT3G12580.1	18065690
AT4G11260.1	TraesCS4B01G206700.1	AT3G12580.1	18065690
AT4G11260.1	TraesCS4D01G207500.1	AT3G12580.1	18065690
AT4G11260.1	TraesCS2A01G263200.1	AT4G37460.1	21798944
AT4G11260.1	TraesCS2B01G273000.1	AT4G37460.1	21798944
AT4G11260.1	TraesCS2B01G279000.1	AT4G37460.1	21798944
AT4G11260.1	TraesCS2D01G260800.1	AT4G37460.1	21798944
AT4G11260.1	TraesCS6D01G402500.1	AT5G02490.1	18065690
AT4G11260.1	TraesCS6D01G402500.1	AT5G02500.1	18065690
AT4G11260.1	TraesCS2A01G414300.2	AT5G51700.1	11847307
AT4G11260.1	TraesCS2B01G433400.1	AT5G51700.1	11847307
AT4G11260.1	TraesCS2D01G411600.1	AT5G51700.1	11847307
AT4G11260.1	TraesCS2A01G414300.2	AT5G51700.1	18065690
AT4G11260.1	TraesCS2B01G433400.1	AT5G51700.1	18065690
AT4G11260.1	TraesCS2D01G411600.1	AT5G51700.1	18065690
AT4G11260.1	TraesCS2A01G033700.1	AT5G52640.1	18065690
AT4G11260.1	TraesCS2B01G047400.1	AT5G52640.1	18065690
AT4G11260.1	TraesCS2D01G033200.2	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G055920.7	Barley	cytosol	81.8	92.76
TraesCS3B01G255300.1	Wheat	cytosol	82.03	92.04
Os01t0624500-01	Rice	cytosol, nucleus	25.3	90.68
EES01101	Sorghum	cytosol	73.52	85.44
Zm00001d044172_P002	Maize	extracellular	72.34	84.76
Zm00001d011401_P001	Maize	extracellular	71.87	84.21
GSMUA_Achr7P10850_001	Banana	cytosol	60.28	69.48
VIT_16s0050g01510.t01	Wine grape	cytosol	57.21	67.04
Solyc03g007670.2.1	Tomato	cytosol, extracellular	58.39	66.76
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	58.39	66.76
KRH08815	Soybean	nucleus	54.85	64.62
KRH38332	Soybean	cytosol, nucleus	54.61	64.35
GSMUA_Achr4P15560_001	Banana	cytosol	56.03	64.23
Bra019295.1-P	Field mustard	cytosol	51.77	63.85
CDY10946	Canola	cytosol	51.77	63.66
CDX94203	Canola	cytosol	51.54	63.37
AT4G23570.3	Thale cress	cytosol	52.01	62.68
GSMUA_Achr7P14290_001	Banana	cytosol	54.61	62.43
PGSC0003DMT400074364	Potato	cytosol	53.9	61.46
CDY28656	Canola	cytosol	10.17	61.43
CDY43481	Canola	cytosol	10.17	61.43
CDY10892	Canola	endoplasmic reticulum, golgi	27.42	61.38
KRH35228	Soybean	cytosol	51.77	61.34
Bra013710.1-P	Field mustard	cytosol	46.57	61.18
CDY44117	Canola	cytosol	51.3	60.78
CDY05137	Canola	cytosol	51.54	60.72
CDX90794	Canola	cytosol	51.06	60.17
Bra035239.1-P	Field mustard	cytosol	50.35	60.0
CDY13243	Canola	cytosol	50.35	59.83
Bra000741.1-P	Field mustard	cytosol	50.59	59.78
CDX86798	Canola	cytosol	50.35	59.66
KRH77588	Soybean	cytosol	50.83	59.56
Solyc06g036420.1.1	Tomato	cytosol	41.61	59.46
CDY10894	Canola	cytosol	49.88	59.44
AT4G11260.1	Thale cress	cytosol	50.12	59.22
KRH27885	Soybean	cytosol	50.59	57.22
Solyc06g036410.1.1	Tomato	cytosol	8.75	56.06
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	28.13	54.09
VIT_02s0025g00450.t01	Wine grape	cytosol	37.83	47.34
Bra019498.1-P	Field mustard	cytosol, plastid	24.59	47.06
KRG94038	Soybean	cytosol, mitochondrion, nucleus	7.8	45.21
CDY63435	Canola	cytosol, mitochondrion, nucleus	28.84	41.5
CDY71639	Canola	cytosol, plastid	10.4	36.97
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	17.02	28.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.1.6.3	Gene3D:2.60.40.790	InterPro:CS_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFAM:PF04969	PFAM:PF05002	PFAM:PF13181	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PFscan:PS51048	PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496
InterPro:SGS_dom	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS3D01G227500	EnsemblPlants:TraesCS3D01G227500.3	TIGR:cd06466	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:309659568..309666194

Molecular Weight (calculated)

46385.3 Da

IEP (calculated)

4.868

GRAVY (calculated)

-0.574

Length

423 amino acids

Sequence
(BLAST)

001: MAAAAASDLE SKAKEAFVDD DFELAAELYT QAIEAGPATA ELYADRAQAH IKLGSYTEAV ADANKAIELD PSMHKAYLRK GSACIKLEEY QTAKAALEVG
101: SSYASGDSRF TRLMKECDDR IAEEASQVPV KNAAAAVAPA TSSGASSGAT TVATEVEDQD GANMENAQPT VEVPSKPKYR DGSFAHGYGY PRVPYPKTTG
201: MGKTLRDFVP MGNGYPYPQN IWVGYGHDYY NTPTEVVLTI FAKGVPADSV VVDFGEQMLS VSIELPGEEP YHFQPRLFSK IVPDKCKYTV LSTKVEMRLA
301: KAEPVTWTSL DYTGKPKAPQ KINVPAESAQ RPSYPSSKSK KDWDKLEAEV KKQEKDEKLD GDAALNKFFR EIYSDADEDM RRAMMKSFVE SNGTVLSTNW
401: KDVGKKTVEG SPPDGMELKK WEY

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.