Factsheet for TraesCS1B01G294300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G255300.1
TraesCS3D01G227500.3
TraesCS4A01G322300.1
TraesCS5B01G556200.1
TraesCS5D01G553300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12580.1	TraesCS3B01G255300.1	AT4G11260.1	18065690
AT3G12580.1	TraesCS3D01G227500.3	AT4G11260.1	18065690
AT3G12580.1	TraesCS4A01G322300.1	AT4G17750.1	11807141
AT3G12580.1	TraesCS5B01G556200.1	AT4G17750.1	11807141
AT3G12580.1	TraesCS5D01G553300.1	AT4G17750.1	11807141

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G284000.2	Wheat	cytosol, golgi	99.85	99.85
TraesCS1A01G285000.2	Wheat	cytosol, golgi	99.69	99.69
HORVU1Hr1G072220.4	Barley	cytosol	89.81	98.81
Os05t0460000-01	Rice	cytosol, nucleus, plastid	94.6	94.89
KRH70484	Soybean	cytosol	81.79	94.64
KRH01631	Soybean	endoplasmic reticulum	94.6	94.45
KXG26133	Sorghum	cytosol	89.51	94.16
TraesCS3B01G390700.1	Wheat	cytosol	94.14	93.56
EES01731	Sorghum	cytosol	93.52	93.52
CDY52661	Canola	cytosol	93.36	93.51
Bra038734.1-P	Field mustard	cytosol	93.67	93.38
Bra001457.1-P	Field mustard	cytosol	84.72	93.37
Zm00001d042922_P002	Maize	cytosol	93.36	93.36
CDY50531	Canola	cytosol	93.52	93.23
TraesCS3B01G390800.1	Wheat	cytosol	89.2	93.23
Zm00001d012420_P001	Maize	plasma membrane	93.21	93.21
CDX73815	Canola	cytosol	93.52	92.94
CDY00784	Canola	cytosol	93.21	92.92
AT3G12580.1	Thale cress	cytosol	93.06	92.77
TraesCS6B01G367800.1	Wheat	golgi, plastid	91.51	91.65
TraesCS2B01G374700.1	Wheat	cytosol	91.36	91.5
TraesCS5B01G087700.4	Wheat	cytosol	91.36	91.5
TraesCS4B01G206700.1	Wheat	cytosol	91.51	91.09
TraesCS5B01G492500.1	Wheat	cytosol	90.74	90.74
TraesCS4B01G205700.1	Wheat	cytosol, golgi	90.74	89.5
TraesCS4B01G142400.1	Wheat	cytosol	92.13	89.24
TraesCS5B01G129700.2	Wheat	cytosol	80.25	83.74
TraesCS6B01G374500.1	Wheat	cytosol	52.01	72.79
TraesCS4B01G206400.1	Wheat	cytosol	63.43	69.9
TraesCS6B01G374400.1	Wheat	cytosol	59.1	69.38
TraesCS6B01G374600.1	Wheat	cytosol	52.31	66.21
TraesCS2B01G535000.2	Wheat	cytosol	51.7	62.73
TraesCS6B01G058300.1	Wheat	endoplasmic reticulum	62.81	61.2
TraesCS4B01G206300.1	Wheat	cytosol	59.41	60.34
TraesCS7B01G331400.1	Wheat	endoplasmic reticulum	59.88	58.79
TraesCS7B01G330900.1	Wheat	endoplasmic reticulum	60.19	58.56
TraesCS5B01G298000.1	Wheat	endoplasmic reticulum, nucleus, unclear	60.03	58.23
TraesCS3B01G296300.1	Wheat	cytosol	45.52	57.28
TraesCS4B01G397600.1	Wheat	mitochondrion	46.6	44.61
TraesCS3B01G331400.4	Wheat	mitochondrion	47.07	44.59
TraesCS1B01G151300.1	Wheat	plastid	46.91	44.31
TraesCS5B01G111200.1	Wheat	golgi, plastid	45.52	42.75
TraesCS2B01G125400.1	Wheat	vacuole	41.98	41.15
TraesCS5B01G267900.1	Wheat	peroxisome	46.45	37.39

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
ncoils:Coil	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047
InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036
PANTHER:PTHR19375	PANTHER:PTHR19375:SF323	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	EnsemblPlantsGene:TraesCS1B01G294300
EnsemblPlants:TraesCS1B01G294300.1	TIGR:cd10233	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:-:512172902..512175830

Molecular Weight (calculated)

71020.6 Da

IEP (calculated)

4.874

GRAVY (calculated)

-0.418

Length

648 amino acids

Sequence
(BLAST)

001: MAKGEGPAIG IDLGTTYSCV GVWQHDRVEI IANDQGNRTT PSYVAFTDTE RLIGDAAKNQ VAMNPTNTVF DAKRLIGRRF SDPSVQSDMK LWPFKVIPGP
101: ADKPMIVVNY KGEEKQFAAE EISSMVLIKM REIAEAFLGN SVKNAVVTVP AYFNDSQRQA TKDAGAIAGL NVLRIINEPT AAAIAYGLDK KATSTGEKNV
201: LIFDLGGGTF DVSLLTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVQEF KRKHKKDITG NPRALRRLRT ACERAKRTLS STAQTTIEID SLYEGVDFYT
301: TITRARFEEL NMDLFRKCME PVEKCLRDAK MDKSTVHDVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGASV QAAILSGEGN EKVQDLLLLD
401: VTPLSLGLET AGGVMTTLIP RNTTIPTKKE QVFSTYSDNQ PGVLIQVYEG ERARTKDNNL LGKFELSGIP PAPRGVPQIT VCFDIDANGI LNVSAEDKTT
501: GQKNKITITN DKGRLSKEEI EKMVQEAERY KAEDEEHKKK VDAKNALENY AYNMRNTVKD DKIASKLGAD DKKKVEDAIE GTISWLDANQ LAEADEFEDK
601: MKELEGICNP IIAKMYQGAA PDMGGGMGMD EDMPAGGGGA GPKIEEVD

Best Arabidopsis Sequence Match ( AT3G09440.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FTDSSVQSDI KLWPFTLKSG
101: PAEKPMIVVN YKGEDKEFSA EEISSMILIK MREIAEAYLG TTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFDGIDFY
301: APITRARFEE LNIDLFRKCM EPVEKCLRDA KMDKNSIDDV VLVGGSTRIP KVQQLLVDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI QRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVDAKNALEN YAYNMRNTIR DEKIGEKLAG DDKKKIEDSI EAAIEWLEAN QLAECDEFED
601: KMKELESICN PIIAKMYQGG EAGGPAAGGM DEDVPPSAGG AGPKIEEVD

Arabidopsis Description

HSP70-3Heat shock protein 70 (Hsp 70) family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.