Factsheet for TraesCS4A01G322300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G285000.2
TraesCS1B01G294300.1
TraesCS1D01G284000.2
TraesCS2A01G146200.2
TraesCS2A01G165800.1
TraesCS2B01G171600.1
TraesCS2B01G191800.1
TraesCS2D01G150800.1
TraesCS2D01G173100.1
TraesCS3B01G390700.1
TraesCS3B01G390800.1
TraesCS3D01G351900.1
TraesCS3D01G352400.2
TraesCS4A01G097900.2
TraesCS4A01G298000.1
TraesCS4B01G015700.2
TraesCS4B01G206700.1
TraesCS4D01G014000.2
TraesCS4D01G207500.1
TraesCS5A01G022000.1
TraesCS5B01G018500.1
TraesCS5D01G027800.3
TraesCS6D01G402500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	TraesCS4A01G298000.1	AT1G55520.1	9801140
AT4G17750.1	TraesCS4B01G015700.2	AT1G55520.1	9801140
AT4G17750.1	TraesCS4D01G014000.2	AT1G55520.1	9801140
AT4G17750.1	TraesCS5A01G022000.1	AT1G55520.1	9801140
AT4G17750.1	TraesCS5B01G018500.1	AT1G55520.1	9801140
AT4G17750.1	TraesCS5D01G027800.3	AT1G55520.1	9801140
AT4G17750.1	TraesCS2A01G146200.2	AT2G41140.1	18466301
AT4G17750.1	TraesCS2B01G171600.1	AT2G41140.1	18466301
AT4G17750.1	TraesCS2D01G150800.1	AT2G41140.1	18466301
AT4G17750.1	TraesCS1A01G285000.2	AT3G12580.1	11807141
AT4G17750.1	TraesCS1B01G294300.1	AT3G12580.1	11807141
AT4G17750.1	TraesCS1D01G284000.2	AT3G12580.1	11807141
AT4G17750.1	TraesCS3B01G390700.1	AT3G12580.1	11807141
AT4G17750.1	TraesCS3B01G390800.1	AT3G12580.1	11807141
AT4G17750.1	TraesCS3D01G351900.1	AT3G12580.1	11807141
AT4G17750.1	TraesCS3D01G352400.2	AT3G12580.1	11807141
AT4G17750.1	TraesCS4A01G097900.2	AT3G12580.1	11807141
AT4G17750.1	TraesCS4B01G206700.1	AT3G12580.1	11807141
AT4G17750.1	TraesCS4D01G207500.1	AT3G12580.1	11807141
AT4G17750.1	TraesCS4A01G298000.1	AT3G13445.1	9801140
AT4G17750.1	TraesCS4B01G015700.2	AT3G13445.1	9801140
AT4G17750.1	TraesCS4D01G014000.2	AT3G13445.1	9801140
AT4G17750.1	TraesCS5A01G022000.1	AT3G13445.1	9801140
AT4G17750.1	TraesCS5B01G018500.1	AT3G13445.1	9801140
AT4G17750.1	TraesCS5D01G027800.3	AT3G13445.1	9801140
AT4G17750.1	TraesCS2A01G165800.1	AT3G19100.1	18466301
AT4G17750.1	TraesCS2B01G191800.1	AT3G19100.1	18466301
AT4G17750.1	TraesCS2D01G173100.1	AT3G19100.1	18466301
AT4G17750.1	TraesCS6D01G402500.1	AT5G02500.1	11807141

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G553300.1	Wheat	nucleus	96.74	96.55
TraesCS5B01G556200.1	Wheat	nucleus	96.74	95.27
HORVU5Hr1G123770.1	Barley	nucleus	94.24	85.54
Os03t0854500-01	Rice	nucleus	76.58	78.85
EER93074	Sorghum	nucleus	78.5	77.61
Zm00001d034886_P001	Maize	nucleus	74.09	73.24
Zm00001d012823_P001	Maize	nucleus	69.48	65.11
GSMUA_Achr4P04500_001	Banana	nucleus	52.4	62.19
GSMUA_Achr3P27600_001	Banana	nucleus	46.83	57.28
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	52.21	53.12
KRH74387	Soybean	nucleus	48.75	51.84
VIT_02s0012g01810.t01	Wine grape	nucleus	49.14	51.61
KRH39566	Soybean	nucleus	48.37	50.4
KRH07474	Soybean	nucleus	48.75	49.8
KRH77766	Soybean	nucleus	43.57	48.92
Solyc03g097120.2.1	Tomato	nucleus	45.87	48.68
CDX85486	Canola	nucleus	41.07	48.42
PGSC0003DMT400046000	Potato	nucleus	47.02	48.23
PGSC0003DMT400008199	Potato	nucleus	45.49	48.17
AT5G16820.2	Thale cress	nucleus	44.34	48.02
Bra040179.1-P	Field mustard	nucleus	39.54	47.69
CDX78797	Canola	nucleus	39.35	47.67
Bra023584.1-P	Field mustard	nucleus	40.31	47.51
CDY38085	Canola	nucleus	39.73	47.15
KRH27709	Soybean	nucleus	41.84	46.98
Bra021381.1-P	Field mustard	nucleus	40.88	46.92
AT3G02990.1	Thale cress	nucleus	42.03	46.79
PGSC0003DMT400038381	Potato	nucleus	44.72	46.79
CDY58547	Canola	nucleus	40.69	46.7
CDY60785	Canola	nucleus	39.16	46.68
Solyc08g076590.2.1	Tomato	nucleus	43.76	46.53
AT1G32330.1	Thale cress	nucleus	42.8	45.98
Solyc08g005170.2.1	Tomato	nucleus	46.45	45.92
Bra023258.1-P	Field mustard	nucleus	42.8	45.79
CDX93842	Canola	nucleus	42.8	45.79
CDX92026	Canola	nucleus	39.35	45.76
Bra032023.1-P	Field mustard	nucleus	39.92	45.61
Bra001071.1-P	Field mustard	nucleus	39.54	45.47
CDX74228	Canola	nucleus	39.54	45.27
CDY01288	Canola	nucleus	42.61	45.12
Solyc06g072750.2.1	Tomato	nucleus	40.88	44.19
PGSC0003DMT400069550	Potato	nucleus	40.69	44.07
CDY28731	Canola	nucleus	36.85	44.04
TraesCS5A01G437900.1	Wheat	nucleus	28.98	43.64
CDY16977	Canola	nucleus	36.85	43.54
AT4G17750.1	Thale cress	nucleus	41.07	43.23
TraesCS1A01G375600.2	Wheat	nucleus	30.52	43.21
Bra008593.1-P	Field mustard	nucleus	39.16	42.24
CDX69418	Canola	nucleus	39.16	41.89
TraesCS3A01G280800.1	Wheat	nucleus	18.04	39.83
TraesCS4A01G027700.1	Wheat	nucleus	25.91	39.59
Bra035507.1-P	Field mustard	nucleus	32.44	39.58
TraesCS5A01G383800.1	Wheat	nucleus	27.26	38.17
TraesCS2A01G089300.1	Wheat	nucleus	29.56	37.29
CDY44649	Canola	nucleus	33.97	37.26
TraesCS5A01G548700.1	Wheat	nucleus	19.0	36.13
TraesCS3A01G405200.1	Wheat	nucleus	27.06	35.52
TraesCS4A01G062800.1	Wheat	nucleus	24.57	33.42
TraesCS5A01G550700.1	Wheat	nucleus	17.47	33.33
TraesCS7A01G355300.1	Wheat	nucleus	16.89	33.08
TraesCS3A01G393100.1	Wheat	nucleus	17.27	31.91
TraesCS7A01G360400.1	Wheat	nucleus	21.88	31.84
TraesCS5A01G524000.1	Wheat	nucleus	15.93	31.68
TraesCS3A01G229000.1	Wheat	nucleus	19.39	31.08
TraesCS6A01G098800.1	Wheat	nucleus	27.26	31.0
TraesCS3A01G393200.1	Wheat	nucleus	18.62	30.89
TraesCS3A01G289200.1	Wheat	nucleus	24.76	29.86
TraesCS1A01G350400.2	Wheat	nucleus	25.34	29.8
CDX84097	Canola	nucleus	15.36	29.74
TraesCS2A01G204500.1	Wheat	nucleus	26.3	27.45

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785
EnsemblPlantsGene:TraesCS4A01G322300	EnsemblPlants:TraesCS4A01G322300.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:610484185..610490550

Molecular Weight (calculated)

57347.6 Da

IEP (calculated)

4.711

GRAVY (calculated)

-0.553

Length

521 amino acids

Sequence
(BLAST)

001: MDGGVAAAVA AAAAASTVTT AVAPPGAAGA GAGAPPPFLM KTYDMVDDPA TDAVVSWGPA NNSFIVWNTP EFARDLLPKY FKHNNFSSFV RQLNTYGFRK
101: VDPDKWEFAN EGFLRGQKHL LKTINRRKPS HANNQVQVQQ QQPQQQQQQQ QPQLQNAPMP SCVEVGKFGM EEEIEMLKRD KNVLMQELVR LRQQQQTTDH
201: QLQTLGKRLH GMEQRQQQMM SFLAKAMQSP GFLAQFVQQN ENSKRRIVAA NKKRRLPKQD DGLNSESALL DGQIIKYQPM INEAAKAMLR KILQQDTSPH
301: RFESMANSDN LLLENCMPSA QTFDSSSSTR NSAVTLAEVP GNSGMPYMPT SSGLSAICSS SSPPEMQRPV LDTNSSTQLP NMSAVPSVPK AMTPGLSDIS
401: IPGFPDLHDL ITEDAINIPV ENFTMPGPEC IFPLPDEGSD DSVPMDPIDT DETDDTQKLP GIIDSFWEQF LCASPLSIDN DEVDSGLLDT RGAQEENGWT
501: RTENLANLTE QMGLLSSNHR G

Best Arabidopsis Sequence Match ( AT1G32330.2 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SR

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.