Factsheet for TraesCS1A01G350400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G081300.1	Barley	nucleus	76.3	78.42
Zm00001d010812_P001	Maize	nucleus	58.92	58.13
EES18551	Sorghum	nucleus	60.5	56.3
Os05t0530400-01	Rice	nucleus	57.79	55.77
Zm00001d038746_P001	Maize	nucleus	57.56	54.37
GSMUA_Achr8P27750_001	Banana	nucleus	24.61	49.32
VIT_10s0003g01770.t01	Wine grape	nucleus	34.31	43.8
CDY13041	Canola	nucleus	29.12	42.02
AT5G45710.3	Thale cress	nucleus	32.28	41.45
VIT_12s0028g01410.t01	Wine grape	nucleus	34.31	41.19
CDY09259	Canola	nucleus	32.51	39.78
Bra017595.1-P	Field mustard	nucleus	30.47	39.71
CDX76506	Canola	nucleus	32.51	39.34
KRH11063	Soybean	nucleus	34.76	39.29
TraesCS3A01G289200.1	Wheat	nucleus	38.15	39.12
CDY23108	Canola	nucleus	30.02	39.12
GSMUA_Achr3P15640_001	Banana	nucleus	39.95	39.07
KRH21206	Soybean	nucleus	34.54	39.03
Solyc02g072000.2.1	Tomato	nucleus	35.67	38.73
CDY69818	Canola	nucleus	34.09	38.72
Bra012571.1-P	Field mustard	nucleus	34.09	38.72
Bra020988.1-P	Field mustard	nucleus	30.02	38.11
KRH42919	Soybean	nucleus	34.54	38.06
CDY01562	Canola	nucleus	33.63	37.91
AT4G18880.1	Thale cress	nucleus	34.31	37.91
KRH59030	Soybean	nucleus	34.31	37.81
CDX99415	Canola	nucleus	32.73	37.76
Solyc07g055710.2.1	Tomato	nucleus	32.28	36.86
Solyc03g006000.2.1	Tomato	nucleus	33.18	36.66
PGSC0003DMT400071487	Potato	nucleus	33.18	36.48
PGSC0003DMT400044683	Potato	nucleus	33.41	35.92
GSMUA_Achr6P31750_001	Banana	nucleus	37.47	34.16
TraesCS3A01G280800.1	Wheat	nucleus	17.38	32.63
TraesCS1A01G375600.2	Wheat	nucleus	25.96	31.25
TraesCS4A01G027700.1	Wheat	nucleus	23.93	31.09
TraesCS5A01G437900.1	Wheat	nucleus	23.48	30.06
TraesCS6A01G098800.1	Wheat	nucleus	30.93	29.91
TraesCS5A01G548700.1	Wheat	nucleus	18.28	29.56
TraesCS7A01G355300.1	Wheat	nucleus	17.16	28.57
TraesCS5A01G550700.1	Wheat	nucleus	17.61	28.57
TraesCS5A01G383800.1	Wheat	nucleus	22.8	27.15
TraesCS2A01G089300.1	Wheat	nucleus	25.06	26.88
TraesCS5A01G524000.1	Wheat	nucleus	15.8	26.72
TraesCS3A01G393100.1	Wheat	nucleus	16.93	26.6
TraesCS4A01G062800.1	Wheat	nucleus	22.35	25.85
TraesCS3A01G405200.1	Wheat	nucleus	23.02	25.69
TraesCS3A01G229000.1	Wheat	nucleus	18.74	25.54
TraesCS4A01G322300.1	Wheat	nucleus	29.8	25.34
TraesCS3A01G393200.1	Wheat	nucleus	17.83	25.16
Bra013358.1-P	Field mustard	nucleus	29.35	25.15
CDX78902	Canola	nucleus	29.35	25.15
TraesCS7A01G360400.1	Wheat	nucleus	19.19	23.74
TraesCS2A01G204500.1	Wheat	nucleus	22.57	20.04

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF154	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS1A01G350400
EnsemblPlants:TraesCS1A01G350400.2	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:+:535312092..535313696

Molecular Weight (calculated)

49563.8 Da

IEP (calculated)

4.630

GRAVY (calculated)

-0.677

Length

443 amino acids

Sequence
(BLAST)

001: MDMDMDMEGG SQSQPQGASL SPAPFLIKTY EMVEDPATSR VVSWGPGGAS FVVWNPPDFS RDLLPKYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANDDF
101: IRGHMHLLKN IHRRKPVHSH SPQNQVNGPL AESERREYEE EISRLKHENS VLVAELQRQA QQQCGLSWLM QSLEERLLAM EQRQADVVAS VRDIQQRRRG
201: DVHPGQQTML ELEPTDHFSK KRRVPTIGFF AEEPAAAAEE HLRATGGETP GMVMVNAEPF EKMELALVSM EKLVQRAGNY APSEDMFSAA TASASAAPST
301: DDPAHAGLQE APVETGVDLQ PTSPELAEPP GYAVQSPMLL FPEIQEDKRN TTAEVDMSSE ASTTGTSQDE TNAEAETPHE QAVANDLFWE RFLTDTPKPL
401: AVEDSHESKD GVKMGLDCYW FGHRNNVDQI TEQMGHLASA QKT

Best Arabidopsis Sequence Match ( AT4G18880.1 )
(BLAST)

001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S

Arabidopsis Description

HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.