Factsheet for Solyc02g072000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006000.2.1	Tomato	nucleus	70.1	71.32
VIT_10s0003g01770.t01	Wine grape	nucleus	52.21	61.38
KRH59030	Soybean	nucleus	53.68	54.48
KRH42919	Soybean	nucleus	53.68	54.48
KRH11063	Soybean	nucleus	51.23	53.32
CDY13041	Canola	nucleus	39.71	52.77
Bra017595.1-P	Field mustard	nucleus	43.63	52.35
KRH21206	Soybean	nucleus	50.25	52.3
AT5G45710.3	Thale cress	nucleus	43.63	51.59
CDY23108	Canola	nucleus	42.89	51.47
CDX76506	Canola	nucleus	45.83	51.09
CDY09259	Canola	nucleus	44.85	50.55
Bra020988.1-P	Field mustard	nucleus	42.65	49.86
Bra012571.1-P	Field mustard	nucleus	47.55	49.74
CDY69818	Canola	nucleus	47.3	49.49
CDX99415	Canola	nucleus	46.32	49.22
CDY01562	Canola	nucleus	46.81	48.6
AT4G18880.1	Thale cress	nucleus	47.06	47.88
Solyc06g053960.2.1	Tomato	nucleus	16.18	46.48
GSMUA_Achr8P27750_001	Banana	nucleus	25.0	46.15
Solyc07g055710.2.1	Tomato	nucleus	39.46	41.49
EES01479	Sorghum	nucleus	41.18	38.71
Os01t0749300-02	Rice	nucleus	41.67	38.64
Zm00001d012749_P001	Maize	nucleus	40.93	38.57
GSMUA_Achr3P15640_001	Banana	nucleus	41.67	37.53
HORVU3Hr1G071550.3	Barley	nucleus	39.71	37.5
TraesCS3A01G289200.1	Wheat	nucleus	39.71	37.5
TraesCS3B01G323800.1	Wheat	nucleus	39.71	36.73
HORVU1Hr1G081300.1	Barley	nucleus	38.24	36.19
TraesCS1A01G350400.2	Wheat	nucleus	38.73	35.67
GSMUA_Achr6P31750_001	Banana	nucleus	42.16	35.39
TraesCS3D01G289000.1	Wheat	nucleus	35.78	35.1
Os05t0530400-01	Rice	nucleus	39.22	34.86
Zm00001d010812_P001	Maize	nucleus	37.75	34.3
Bra013358.1-P	Field mustard	nucleus	43.14	34.04
CDX78902	Canola	nucleus	43.14	34.04
EES18551	Sorghum	nucleus	37.75	32.35
Zm00001d038746_P001	Maize	nucleus	36.76	31.98
Solyc09g082670.2.1	Tomato	nucleus	26.23	30.06
Solyc09g065660.2.1	Tomato	nucleus	26.47	29.03
Solyc12g098520.1.1	Tomato	nucleus	33.58	28.66
Solyc07g040680.2.1	Tomato	nucleus	23.04	26.4
Solyc08g076590.2.1	Tomato	nucleus	30.39	25.31
Solyc03g097120.2.1	Tomato	nucleus	29.9	24.85
Solyc06g072750.2.1	Tomato	nucleus	28.92	24.48
Solyc12g007070.1.1	Tomato	nucleus	22.06	24.39
Solyc08g005170.2.1	Tomato	nucleus	30.39	23.53
Solyc09g009100.2.1	Tomato	nucleus	25.0	20.04

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:K4B8H5	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF154	SMART:SM00415	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc02g072000.2	EnsemblPlants:Solyc02g072000.2.1	UniParc:UPI00027691EA	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:

Description

No Description!

Coordinates

chr2:+:41325300..41327107

Molecular Weight (calculated)

46171.0 Da

IEP (calculated)

5.092

GRAVY (calculated)

-0.726

Length

408 amino acids

Sequence
(BLAST)

001: MDEASCSTNA LPPFIAKTYE MVDDPSCDAI VSWSSNNKSF IVWNPPDFAR DLLPRYFKHN NFSSFIRQLN TYGFRKIDPE KWEFANEGNF IRGQPNLLKN
101: IHRRKPVHSH SAQNLHGLSS PLTESERQGY KEDIQKLMHE NGSLHLDLQR HKQDHQGLEL QMQVLTERVQ HAEHRQKTMI SALAQTLDRP VMDLSHMPQL
201: QVNDRKRRFP GNSCLYNESD LEDMRGISSR ALSRENMNPS SLLTMNAELL DQLESSLTFW EDVLQDVDQA GMRPNCLLQL DESTSCADSP AISYTQLNID
301: VGPKASGIDM NSEPNANIMP EVAEPEDKAA VAGTSTNVPT GVNDLFWEQF LTENPGSVDA PEVQSERKDI GSKKNESKPV DSGKYWWNMK SVNSLAEQMG
401: HLTPAEKT

Best Arabidopsis Sequence Match ( AT4G18880.1 )
(BLAST)

001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S

Arabidopsis Description

HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.