Factsheet for Solyc08g076590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g028930.2.1
Solyc01g108400.2.1
Solyc10g078390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	Solyc01g028930.2.1	AT1G55520.1	9801140
AT4G17750.1	Solyc10g078390.1.1	AT2G41140.1	18466301
AT4G17750.1	Solyc01g028930.2.1	AT3G13445.1	9801140
AT4G17750.1	Solyc01g108400.2.1	AT3G19100.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038381	Potato	nucleus	91.02	89.56
Solyc08g005170.2.1	Tomato	nucleus	56.33	52.37
VIT_02s0012g01810.t01	Wine grape	nucleus	52.45	51.81
GSMUA_Achr4P04500_001	Banana	nucleus	44.49	49.66
KRH07474	Soybean	nucleus	51.02	49.02
KRH39566	Soybean	nucleus	50.0	49.0
KRH74387	Soybean	nucleus	48.98	48.98
Solyc06g053960.2.1	Tomato	nucleus	13.67	47.18
GSMUA_Achr3P27600_001	Banana	nucleus	40.0	46.01
CDX78797	Canola	nucleus	40.2	45.81
Os03t0854500-01	Rice	nucleus	46.94	45.45
Bra040179.1-P	Field mustard	nucleus	40.0	45.37
AT1G32330.1	Thale cress	nucleus	44.49	44.95
CDY60785	Canola	nucleus	40.0	44.85
TraesCS5D01G553300.1	Wheat	nucleus	46.73	43.87
TraesCS4A01G322300.1	Wheat	nucleus	46.53	43.76
GSMUA_Achr4P17040_001	Banana	nucleus	43.47	43.74
TraesCS5B01G556200.1	Wheat	nucleus	46.73	43.29
EER93074	Sorghum	nucleus	46.12	42.88
Solyc03g097120.2.1	Tomato	nucleus	42.45	42.36
AT4G17750.1	Thale cress	nucleus	42.65	42.22
Zm00001d034886_P001	Maize	nucleus	45.1	41.94
Bra023258.1-P	Field mustard	nucleus	41.63	41.89
CDX93842	Canola	nucleus	41.43	41.68
CDY01288	Canola	nucleus	41.22	41.06
HORVU5Hr1G123770.1	Barley	nucleus	46.33	39.55
Zm00001d012823_P001	Maize	nucleus	43.67	38.49
Bra035507.1-P	Field mustard	nucleus	33.47	38.41
Solyc06g072750.2.1	Tomato	nucleus	36.73	37.34
Solyc09g065660.2.1	Tomato	nucleus	27.55	36.29
Solyc09g082670.2.1	Tomato	nucleus	26.33	36.24
CDY44649	Canola	nucleus	33.67	34.74
Solyc07g040680.2.1	Tomato	nucleus	23.06	31.74
Solyc07g055710.2.1	Tomato	nucleus	25.1	31.7
Solyc03g006000.2.1	Tomato	nucleus	24.9	30.42
Solyc02g072000.2.1	Tomato	nucleus	25.31	30.39
Solyc12g098520.1.1	Tomato	nucleus	26.94	27.62
CDX84097	Canola	nucleus	15.1	27.51
Solyc12g007070.1.1	Tomato	nucleus	17.96	23.85
Solyc09g009100.2.1	Tomato	nucleus	24.49	23.58

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:K4CN21	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc08g076590.2	EnsemblPlants:Solyc08g076590.2.1	UniParc:UPI000276BECD	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chr8:-:60544679..60548096

Molecular Weight (calculated)

55019.8 Da

IEP (calculated)

4.950

GRAVY (calculated)

-0.672

Length

490 amino acids

Sequence
(BLAST)

001: MDAGGGSPVP EITPAPMPSS NAVPPFLMKT YDMVDDPSTD KIVSWSPTDS SFVIWDPPEF AKQLLPKYFK HSNFSSFVRQ LNTYGFRKVG SDLWKFSNDG
101: FIRGQKHLLK NISRRKPAHG QQQQQQLHSQ SASVGACVEV GNFGLEKEVE WLKRDKNVLM QELVKLRQHQ QTTDNQMQNM VQNLQIMEQR QQQMMSFLAK
201: AVNSPGFFAQ FVQQQNDNNK RKMEGKKKRR IRQDFPSDDH SVRPADGQLV KYHPIMNETA KGMLTQITKL DSSPRLENFS NSPESPPIGD AFDGRSNSRI
301: SGVTLQEVSP AFSQPFASTT SAIAGQSSLS ANIQFSESSS PIGAQNLPPI VPFSSDMIMP MPSQLQEIVP ENNMDINGTE RGNDSFMDPT LWGNGELPLE
401: NDIFPPDLQI KWESALVDDI GEPPTVTDPS WEKFLQSLYP PTETEEMGSV ETENDKTTET ELLGNGWYNV QHMEHLTEQM GLLTSNTKKV

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.