Factsheet for GSMUA_Achr4P04500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P21380_001
GSMUA_Achr1P26830_001
GSMUA_Achr2P07660_001
GSMUA_Achr3P18430_001
GSMUA_Achr5P08990_001
GSMUA_Achr6P16020_001
GSMUA_Achr6P23210_001
GSMUA_Achr6P23680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	GSMUA_Achr1P26830_001	AT1G55520.1	9801140
AT4G17750.1	GSMUA_Achr5P08990_001	AT1G55520.1	9801140
AT4G17750.1	GSMUA_Achr6P23210_001	AT1G55520.1	9801140
AT4G17750.1	GSMUA_Achr10P...	AT2G41140.1	18466301
AT4G17750.1	GSMUA_Achr3P18430_001	AT2G41140.1	18466301
AT4G17750.1	GSMUA_Achr6P16020_001	AT2G41140.1	18466301
AT4G17750.1	GSMUA_Achr6P23680_001	AT2G41140.1	18466301
AT4G17750.1	GSMUA_Achr1P26830_001	AT3G13445.1	9801140
AT4G17750.1	GSMUA_Achr5P08990_001	AT3G13445.1	9801140
AT4G17750.1	GSMUA_Achr6P23210_001	AT3G13445.1	9801140
AT4G17750.1	GSMUA_Achr1P21380_001	AT3G19100.1	18466301
AT4G17750.1	GSMUA_Achr2P07660_001	AT3G19100.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P27600_001	Banana	nucleus	76.77	79.11
GSMUA_Achr3P06020_001	Banana	nucleus	21.87	63.16
GSMUA_Achr4P17040_001	Banana	nucleus	59.0	53.18
TraesCS5D01G553300.1	Wheat	nucleus	62.41	52.49
TraesCS4A01G322300.1	Wheat	nucleus	62.19	52.4
Os03t0854500-01	Rice	nucleus	60.36	52.37
TraesCS5B01G556200.1	Wheat	nucleus	62.41	51.8
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	59.45	50.98
Zm00001d034886_P001	Maize	nucleus	59.91	49.91
EER93074	Sorghum	nucleus	59.91	49.91
KRH07474	Soybean	nucleus	57.4	49.41
VIT_02s0012g01810.t01	Wine grape	nucleus	55.58	49.19
KRH74387	Soybean	nucleus	54.21	48.57
AT5G16820.2	Thale cress	nucleus	52.85	48.23
CDY38085	Canola	nucleus	48.06	48.06
CDX85486	Canola	nucleus	47.84	47.51
KRH39566	Soybean	nucleus	53.99	47.4
HORVU5Hr1G123770.1	Barley	nucleus	61.96	47.39
Bra023584.1-P	Field mustard	nucleus	47.61	47.29
PGSC0003DMT400046000	Potato	nucleus	54.21	46.85
KRH77766	Soybean	nucleus	49.43	46.77
GSMUA_Achr8P27750_001	Banana	nucleus	23.46	46.61
CDX78797	Canola	nucleus	45.56	46.51
PGSC0003DMT400008199	Potato	nucleus	51.94	46.34
Solyc03g097120.2.1	Tomato	nucleus	51.71	46.23
Bra040179.1-P	Field mustard	nucleus	45.33	46.06
KRH27709	Soybean	nucleus	48.29	45.69
Bra032023.1-P	Field mustard	nucleus	47.38	45.61
Bra021381.1-P	Field mustard	nucleus	46.92	45.37
Zm00001d012823_P001	Maize	nucleus	57.4	45.32
CDY60785	Canola	nucleus	45.1	45.31
Solyc08g005170.2.1	Tomato	nucleus	54.21	45.16
CDY58547	Canola	nucleus	46.7	45.15
AT1G32330.1	Thale cress	nucleus	49.66	44.95
Solyc08g076590.2.1	Tomato	nucleus	49.66	44.49
GSMUA_Achr8P20520_001	Banana	nucleus	29.39	44.48
AT3G02990.1	Thale cress	nucleus	47.38	44.44
CDY16977	Canola	nucleus	44.42	44.22
CDY28731	Canola	nucleus	43.74	44.04
GSMUA_Achr5P03000_001	Banana	nucleus	33.49	44.01
Bra001071.1-P	Field mustard	nucleus	45.1	43.71
GSMUA_Achr2P16660_001	Banana	nucleus	27.11	43.59
CDX74228	Canola	nucleus	45.1	43.52
Bra008593.1-P	Field mustard	nucleus	47.84	43.48
PGSC0003DMT400038381	Potato	nucleus	49.2	43.37
Bra023258.1-P	Field mustard	nucleus	48.06	43.33
CDX93842	Canola	nucleus	48.06	43.33
CDX69418	Canola	nucleus	47.84	43.12
CDY01288	Canola	nucleus	48.29	43.09
CDX92026	Canola	nucleus	43.96	43.08
GSMUA_Achr6P00960_001	Banana	nucleus	30.3	42.49
AT4G17750.1	Thale cress	nucleus	47.38	42.02
GSMUA_Achr6P24430_001	Banana	nucleus	29.39	41.88
PGSC0003DMT400069550	Potato	nucleus	45.56	41.58
Solyc06g072750.2.1	Tomato	nucleus	44.87	40.87
GSMUA_Achr1P27200_001	Banana	nucleus	30.52	40.24
GSMUA_Achr2P21640_001	Banana	nucleus	30.07	39.76
Bra035507.1-P	Field mustard	nucleus	37.59	38.64
GSMUA_Achr7P24790_001	Banana	nucleus	17.54	36.84
CDY44649	Canola	nucleus	38.72	35.79
GSMUA_Achr3P15740_001	Banana	nucleus	22.32	35.51
GSMUA_Achr6P27750_001	Banana	nucleus	31.21	34.86
GSMUA_Achr3P31860_001	Banana	nucleus	25.28	34.26
GSMUA_Achr4P30990_001	Banana	nucleus	22.55	34.26
GSMUA_Achr9P01640_001	Banana	nucleus	29.61	34.12
GSMUA_Achr3P15640_001	Banana	nucleus	34.62	33.55
GSMUA_Achr8P28330_001	Banana	nucleus	24.6	33.03
GSMUA_Achr6P31750_001	Banana	nucleus	33.26	30.04
GSMUA_Achr8P27820_001	Banana	nucleus	24.83	30.03
GSMUA_Achr10P...	Banana	nucleus	20.27	29.18
CDX84097	Canola	nucleus	16.4	26.77
GSMUA_Achr5P15900_001	Banana	nucleus	32.12	25.78

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr4G04500_001	EnsemblPlants:GSMUA_Achr4P04500_001	EnsemblPlants:GSMUA_Achr4T04500_001	InterPro:HSF_DNA-bd
InterPro:HSF_fam	InterPro:IPR036388	UniProt:M0SL17	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI000296156F	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

Heat stress transcription factor A-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G04500_001]

Coordinates

chr4:-:3559855..3567615

Molecular Weight (calculated)

49077.5 Da

IEP (calculated)

4.759

GRAVY (calculated)

-0.686

Length

439 amino acids

Sequence
(BLAST)

001: MDGVGGDGGG AQTAAATTAN ASLNGGAPPP FLSKTYEMVD DPATDAIVSW GSANNSFVVW NTTEFARDLL PKYFKHNNFS SFVRQLNTYG FRKVDPDQWE
101: FANEGFLRGQ KHLLKNISRR KSTHPHNQQQ QPQTQSSIEV GKFGMEEEIE RLKRDKNVLM QELVRLRQQQ QATDQQLNTL GQRLQGMEQR QQQMMSFLAK
201: AMQSPGFLAQ LVQQNDSNRR IVGVNKKRRL PRQENKVDGE SAVHDGQIIK YQPLINEAAK AMLMQILKFD TSPRLESFGN SQNLLLENFS SPVEAFDGRS
301: SLKRISGVTL SEVPATDMVA TTEMPNMNTG AGYIGPTGGN IPMNPEFMDQ LAGIDTEKFS FDTDVDILND DEKLPSINDP FWEQFLTASP LLGDAEEVDS
401: GIHETEEMRL ESGDDWGSSP NMDHLTEQMG HLTSETNRH

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.