Factsheet for GSMUA_Achr6P00960_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P16660_001
GSMUA_Achr6P00960_001
GSMUA_Achr8P19130_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26150.1	GSMUA_Achr2P16660_001	AT2G26150.1	21510947
AT2G26150.1	GSMUA_Achr6P00960_001	AT2G26150.1	21510947
AT2G26150.1	GSMUA_Achr8P19130_001	AT5G52640.1	19366428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P16660_001	Banana	nucleus	62.94	72.16
GSMUA_Achr3P06020_001	Banana	nucleus	23.96	49.34
GSMUA_Achr8P20520_001	Banana	nucleus	42.49	45.86
VIT_04s0008g01110.t01	Wine grape	nucleus	56.23	45.36
KRH05436	Soybean	nucleus	51.44	45.35
GSMUA_Achr6P24430_001	Banana	nucleus	43.77	44.48
KRH15573	Soybean	nucleus	51.44	44.23
KRH61515	Soybean	nucleus	51.76	43.55
PGSC0003DMT400021234	Potato	nucleus	48.88	43.34
Os06t0565200-00	Rice	nucleus	45.05	42.6
CDY21503	Canola	nucleus	47.28	42.41
GSMUA_Achr1P27200_001	Banana	nucleus	44.73	42.04
AT2G26150.1	Thale cress	nucleus	46.01	41.74
Bra000557.1-P	Field mustard	nucleus	46.33	41.67
TraesCS7B01G267300.1	Wheat	nucleus	44.41	39.38
CDX83217	Canola	nucleus	46.65	39.14
GSMUA_Achr5P03000_001	Banana	nucleus	41.53	38.92
TraesCS7A01G360400.1	Wheat	nucleus	44.09	38.55
Zm00001d046204_P001	Maize	nucleus	44.41	38.08
HORVU7Hr1G087690.1	Barley	nucleus	43.77	37.53
GSMUA_Achr7P24790_001	Banana	nucleus	22.68	33.97
GSMUA_Achr8P27750_001	Banana	nucleus	23.32	33.03
KXG20211	Sorghum	nucleus	42.49	31.89
GSMUA_Achr4P30990_001	Banana	nucleus	29.39	31.83
GSMUA_Achr2P21640_001	Banana	nucleus	33.23	31.33
GSMUA_Achr3P15740_001	Banana	nucleus	27.16	30.8
GSMUA_Achr4P04500_001	Banana	nucleus	42.49	30.3
GSMUA_Achr3P27600_001	Banana	nucleus	39.94	29.34
Os01t0571300-01	Rice	mitochondrion, nucleus	36.42	28.36
GSMUA_Achr4P17040_001	Banana	nucleus	43.13	27.72
GSMUA_Achr10P...	Banana	nucleus	26.84	27.54
EES00942	Sorghum	plastid	34.5	27.41
GSMUA_Achr3P31860_001	Banana	nucleus	28.11	27.16
GSMUA_Achr9P01640_001	Banana	nucleus	32.91	27.03
GSMUA_Achr8P28330_001	Banana	nucleus	27.8	26.61
GSMUA_Achr6P27750_001	Banana	nucleus	31.95	25.45
GSMUA_Achr8P27820_001	Banana	nucleus	28.43	24.52
Zm00001d044259_P001	Maize	plastid	28.75	23.87
GSMUA_Achr3P15640_001	Banana	nucleus	33.87	23.4
GSMUA_Achr6P31750_001	Banana	nucleus	33.23	21.4
GSMUA_Achr5P15900_001	Banana	nucleus	33.87	19.38

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G00960_001	EnsemblPlants:GSMUA_Achr6P00960_001	EnsemblPlants:GSMUA_Achr6T00960_001	InterPro:HSF_DNA-bd	InterPro:HSF_fam
InterPro:IPR036388	UniProt:M0T344	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015
PANTHER:PTHR10015:SF186	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI000294A8A4	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

Putative Heat stress transcription factor A-2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G00960_001]

Coordinates

chr6:-:657409..658878

Molecular Weight (calculated)

35825.2 Da

IEP (calculated)

4.622

GRAVY (calculated)

-0.694

Length

313 amino acids

Sequence
(BLAST)

001: MENAVLMVKE EEEEEGEAMA APQPLTGLDE VGPTPFLSKT FDMVEDPETD AVVSWSRARN SFIVWDSHKF AIALLPKYFK HSNFSSFVRQ LNTYGFRKVD
101: PDRWEFANAD FLGGRKHLLK NIKRRRGADR LRRDRNVMML EIVKLRQRQQ SSRAQLVEME RRMQGTERRQ QRTMAFLARA LKSPTFIREL VLRGQQQRQL
201: GGAGKKRRLP ANPSSKDLLE LAISSEIDSV SLSSTETDGA TPEPVDQSTA AISDLTWEEL LNESILMEGD EEEGEHSEVE AEAEDLESAA EQLEWEEDMK
301: DLVIQMDYMN SNP

Best Arabidopsis Sequence Match ( AT2G26150.4 )
(BLAST)

001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP

Arabidopsis Description

HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.