Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400021234 | |
| PGSC0003DMT400024594 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26150.1 | PGSC0003DMT400021234 | AT2G26150.1 | 21510947 |
| AT2G26150.1 | PGSC0003DMT400024594 | AT5G52640.1 | 19366428 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g01110.t01 | Wine grape | nucleus | 58.92 | 53.61 |
| GSMUA_Achr2P16660_001 | Banana | nucleus | 41.36 | 53.48 |
| KRH05436 | Soybean | nucleus | 52.97 | 52.68 |
| KRH15573 | Soybean | nucleus | 53.54 | 51.92 |
| AT2G26150.1 | Thale cress | nucleus | 49.86 | 51.01 |
| CDY21503 | Canola | nucleus | 49.86 | 50.43 |
| Bra000557.1-P | Field mustard | nucleus | 49.58 | 50.29 |
| KRH61515 | Soybean | nucleus | 52.41 | 49.73 |
| GSMUA_Achr6P00960_001 | Banana | nucleus | 43.34 | 48.88 |
| CDX83217 | Canola | nucleus | 49.58 | 46.92 |
| Os06t0565200-00 | Rice | nucleus | 37.11 | 39.58 |
| PGSC0003DMT400016511 | Potato | nucleus | 39.38 | 38.4 |
| PGSC0003DMT400049793 | Potato | nucleus | 38.53 | 37.36 |
| PGSC0003DMT400049795 | Potato | nucleus | 37.68 | 36.94 |
| Zm00001d046204_P001 | Maize | nucleus | 37.96 | 36.71 |
| PGSC0003DMT400082752 | Potato | nucleus | 37.11 | 36.29 |
| PGSC0003DMT400041944 | Potato | nucleus | 34.84 | 35.76 |
| TraesCS7B01G267300.1 | Wheat | nucleus | 35.69 | 35.69 |
| TraesCS7A01G360400.1 | Wheat | nucleus | 35.13 | 34.64 |
| HORVU7Hr1G087690.1 | Barley | nucleus | 34.56 | 33.42 |
| KXG20211 | Sorghum | nucleus | 35.69 | 30.22 |
| EES00942 | Sorghum | plastid | 32.58 | 29.19 |
| Os01t0571300-01 | Rice | mitochondrion, nucleus | 33.14 | 29.1 |
| PGSC0003DMT400046000 | Potato | nucleus | 38.81 | 26.97 |
| PGSC0003DMT400008199 | Potato | nucleus | 37.11 | 26.63 |
| PGSC0003DMT400069550 | Potato | nucleus | 35.98 | 26.4 |
| PGSC0003DMT400038381 | Potato | nucleus | 37.11 | 26.31 |
| Zm00001d044259_P001 | Maize | plastid | 27.76 | 25.99 |
| PGSC0003DMT400001025 | Potato | nucleus | 26.06 | 25.0 |
| PGSC0003DMT400071487 | Potato | nucleus | 27.76 | 24.32 |
| PGSC0003DMT400044683 | Potato | nucleus | 26.63 | 22.82 |
| PGSC0003DMT400006917 | Potato | nucleus | 31.16 | 22.13 |
| PGSC0003DMT400011871 | Potato | nucleus | 28.9 | 21.34 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:102593812 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0001666 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009408 | GO:GO:0009628 | GO:GO:0009644 | GO:GO:0009719 |
| GO:GO:0009987 | GO:GO:0010200 | GO:GO:0010286 | GO:GO:0034605 | GO:GO:0034620 | GO:GO:0042542 |
| GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045893 | GO:GO:0071456 | InterPro:HSF_DNA-bd | InterPro:HSF_fam |
| InterPro:IPR036388 | UniProt:M1AET7 | PFAM:PF00447 | EnsemblPlantsGene:PGSC0003DMG400008223 | PGSC:PGSC0003DMG400008223 | EnsemblPlants:PGSC0003DMT400021234 |
| PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF186 | SMART:SM00415 | SUPFAM:SSF46785 |
| UniParc:UPI0002948A6F | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | RefSeq:XP_006351581.1 | SEG:seg | : |
Description
Heat shock factor protein HSF30 [Source:PGSC_GENE;Acc:PGSC0003DMG400008223]
Coordinates
chr8:-:35415712..35418551
Molecular Weight (calculated)
40712.0 Da
IEP (calculated)
4.648
GRAVY (calculated)
-0.659
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVVKVKVE EDGIPTAVLP MEGLHDVGPP PFLSKTYEMV EDSSTDEVIS WSTTRNSFIV WDSHKFSTTL LPRFFKHSNF SSFIRQLNTY GFRKVDPDRW
101: EFANEGFLGG QKHLLKTIKR RRNVGQSMNQ QGSGACIEIG YYGMEEELER LKRDKNVLMT EIVKLRQQQQ STRNQIIAMG EKIERQERKQ EQMMSFLAKI
201: FSNPTFLQQY LDKHVQRKDK QRIEVGQKRR LTMTPSAENL QDVATRSDHQ PMNYSSHQER EAELASIEML FSAAMDNESS SNVRSASVVT ANGTGPEDIW
301: EELFSEDLIS GDRAEEVLVV EQPEFDVEVE DLVAKTPEWG EELQDLVDQL DFL
101: EFANEGFLGG QKHLLKTIKR RRNVGQSMNQ QGSGACIEIG YYGMEEELER LKRDKNVLMT EIVKLRQQQQ STRNQIIAMG EKIERQERKQ EQMMSFLAKI
201: FSNPTFLQQY LDKHVQRKDK QRIEVGQKRR LTMTPSAENL QDVATRSDHQ PMNYSSHQER EAELASIEML FSAAMDNESS SNVRSASVVT ANGTGPEDIW
301: EELFSEDLIS GDRAEEVLVV EQPEFDVEVE DLVAKTPEWG EELQDLVDQL DFL
001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
Arabidopsis Description
HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.