Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400049795 | Potato | nucleus | 94.51 | 95.56 |
| Solyc09g065660.2.1 | Tomato | nucleus | 93.41 | 91.4 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 64.29 | 64.82 |
| AT3G51910.1 | Thale cress | nucleus | 44.51 | 59.56 |
| KRG95588 | Soybean | nucleus | 59.62 | 58.65 |
| Bra012829.1-P | Field mustard | nucleus | 39.56 | 58.06 |
| CDX95313 | Canola | nucleus | 41.76 | 56.72 |
| KRH67266 | Soybean | nucleus | 59.89 | 56.48 |
| Bra012828.1-P | Field mustard | nucleus | 41.48 | 56.13 |
| CDX90626 | Canola | nucleus | 41.48 | 56.13 |
| CDY29054 | Canola | nucleus | 40.11 | 55.09 |
| KRH32059 | Soybean | nucleus | 50.0 | 53.37 |
| CDX90627 | Canola | nucleus | 41.76 | 52.96 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 41.21 | 51.72 |
| AT3G63350.1 | Thale cress | nucleus | 38.46 | 49.65 |
| Bra007739.1-P | Field mustard | nucleus | 38.74 | 49.47 |
| CDX76693 | Canola | nucleus | 38.74 | 49.47 |
| CDY11470 | Canola | nucleus | 38.74 | 49.47 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 40.38 | 47.73 |
| EER93298 | Sorghum | nucleus | 43.96 | 47.2 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 43.13 | 47.01 |
| PGSC0003DMT400016511 | Potato | nucleus | 46.7 | 46.96 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 43.96 | 46.24 |
| TraesCS5D01G445100.1 | Wheat | nucleus | 43.96 | 45.98 |
| TraesCS5B01G440700.1 | Wheat | nucleus | 44.51 | 45.89 |
| Os10t0419300-00 | Rice | nucleus | 45.05 | 45.81 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 42.86 | 45.75 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 42.86 | 45.75 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 42.31 | 45.16 |
| Zm00001d032923_P002 | Maize | nucleus | 44.23 | 45.1 |
| PGSC0003DMT400041944 | Potato | nucleus | 42.58 | 45.06 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 42.58 | 45.06 |
| EER94213 | Sorghum | nucleus | 44.78 | 45.03 |
| Os07t0178600-01 | Rice | nucleus | 45.88 | 44.89 |
| EER95940 | Sorghum | nucleus | 45.6 | 44.62 |
| Os03t0161900-02 | Rice | nucleus | 46.15 | 44.33 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 40.38 | 44.14 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 42.86 | 43.58 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 44.23 | 43.28 |
| Zm00001d018941_P001 | Maize | nucleus | 44.51 | 43.2 |
| TraesCS1D01G382900.1 | Wheat | nucleus | 42.86 | 42.86 |
| EER95463 | Sorghum | nucleus | 45.88 | 42.71 |
| Zm00001d027757_P001 | Maize | nucleus | 44.51 | 42.19 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 42.58 | 42.12 |
| TraesCS2D01G087400.1 | Wheat | nucleus | 45.05 | 39.81 |
| HORVU2Hr1G014590.1 | Barley | nucleus | 45.6 | 39.71 |
| EER90889 | Sorghum | nucleus | 40.38 | 39.62 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 43.68 | 39.26 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 44.51 | 39.23 |
| Zm00001d033987_P001 | Maize | nucleus | 39.29 | 38.54 |
| PGSC0003DMT400021234 | Potato | nucleus | 37.36 | 38.53 |
| HORVU5Hr1G094380.1 | Barley | nucleus | 38.74 | 38.01 |
| TraesCS5D01G393200.1 | Wheat | nucleus | 39.29 | 37.93 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 38.46 | 37.63 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 40.93 | 37.53 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 40.66 | 34.18 |
| PGSC0003DMT400082752 | Potato | nucleus | 32.69 | 32.96 |
| HORVU5Hr1G105770.2 | Barley | nucleus | 45.33 | 31.67 |
| PGSC0003DMT400046000 | Potato | nucleus | 37.36 | 26.77 |
| PGSC0003DMT400008199 | Potato | nucleus | 35.44 | 26.22 |
| PGSC0003DMT400038381 | Potato | nucleus | 35.71 | 26.1 |
| Zm00001d034433_P003 | Maize | nucleus | 44.51 | 26.09 |
| PGSC0003DMT400069550 | Potato | nucleus | 34.07 | 25.78 |
| PGSC0003DMT400044683 | Potato | nucleus | 28.3 | 25.0 |
| PGSC0003DMT400011871 | Potato | nucleus | 32.69 | 24.9 |
| PGSC0003DMT400071487 | Potato | nucleus | 27.47 | 24.81 |
| PGSC0003DMT400006917 | Potato | nucleus | 32.69 | 23.94 |
| PGSC0003DMT400001025 | Potato | nucleus | 23.9 | 23.64 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | UniProt:M1BPC1 | PFAM:PF00447 |
| EnsemblPlantsGene:PGSC0003DMG402019343 | PGSC:PGSC0003DMG402019343 | EnsemblPlants:PGSC0003DMT400049793 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 |
| PANTHER:PTHR10015:SF260 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI000295F43F | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402019343]
Coordinates
chr9:+:48449647..48452200
Molecular Weight (calculated)
42036.6 Da
IEP (calculated)
5.510
GRAVY (calculated)
-0.784
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQLYSVKEE FPGSSSGGGE PPPLTPQPME GLHDIGPPPF LTKTYEMVDD STIDHVVSWN RGGQSFVVWD PHAFSTTLLP RFFKHNNFSS FVRQLNTYGF
101: RKIDPERWEF ANEAFLKGSK HLLRNIKRRK TPNSPTEQGL GPCVELGRFG FDGEIDRLRR DKQVLMMELV KLRQNQQNTR AYIRSLEVKL QGTERKQQQM
201: MNFLARAMQN PEFVHQLIHQ KGKRIEIEED ITKKRRRPID HQGPVSTLHV GGSSHYIKSE PLEFGEANGF QVSELEALAL EMQGFGRARK DQQEEYTIEG
301: LEQFGNTDKE LDEGFWEELF NDEDVSGNED REEEDVDVLA ESEFSSFQRR MKKAAIWINQ LLVG
101: RKIDPERWEF ANEAFLKGSK HLLRNIKRRK TPNSPTEQGL GPCVELGRFG FDGEIDRLRR DKQVLMMELV KLRQNQQNTR AYIRSLEVKL QGTERKQQQM
201: MNFLARAMQN PEFVHQLIHQ KGKRIEIEED ITKKRRRPID HQGPVSTLHV GGSSHYIKSE PLEFGEANGF QVSELEALAL EMQGFGRARK DQQEEYTIEG
301: LEQFGNTDKE LDEGFWEELF NDEDVSGNED REEEDVDVLA ESEFSSFQRR MKKAAIWINQ LLVG
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.