Factsheet for Os10t0419300-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21729241

gfp PMID: 21729241 doi

D Mittal, Y Enoki, D Lavania, A Singh, H Sakurai, A Grover

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94213	Sorghum	nucleus	81.28	80.39
Zm00001d032923_P002	Maize	nucleus	77.65	77.87
HORVU1Hr1G083420.2	Barley	nucleus	79.61	76.61
TraesCS1B01G396000.1	Wheat	nucleus	75.7	75.7
TraesCS1A01G375600.2	Wheat	nucleus	77.37	75.27
TraesCS1D01G382900.1	Wheat	nucleus	75.7	74.45
Os03t0161900-02	Rice	nucleus	66.2	62.53
Solyc06g053960.2.1	Tomato	nucleus	24.3	61.27
GSMUA_Achr6P24430_001	Banana	nucleus	47.77	55.52
CDX95313	Canola	nucleus	39.94	53.36
GSMUA_Achr1P27200_001	Banana	nucleus	49.16	52.85
AT3G51910.1	Thale cress	nucleus	39.94	52.57
Bra012829.1-P	Field mustard	nucleus	36.03	52.02
Os07t0178600-01	Rice	nucleus	53.07	51.08
Bra012828.1-P	Field mustard	nucleus	37.99	50.56
CDX90626	Canola	nucleus	37.99	50.56
VIT_00s0179g00150.t01	Wine grape	nucleus	50.84	50.42
CDY29054	Canola	nucleus	37.15	50.19
KRG95588	Soybean	nucleus	51.4	49.73
KRH67266	Soybean	nucleus	53.07	49.22
KRH32059	Soybean	nucleus	46.65	48.97
CDX94887	Canola	nucleus	36.87	48.89
KRG91367	Soybean	nucleus	49.44	48.36
KRH31657	Soybean	nucleus	45.25	48.07
CDX90627	Canola	nucleus	38.27	47.74
Solyc09g082670.2.1	Tomato	nucleus	46.37	46.63
PGSC0003DMT400016511	Potato	nucleus	46.65	46.13
CDY10674	Canola	nucleus	50.0	46.02
CDY34229	Canola	nucleus	48.6	45.91
KRH35452	Soybean	nucleus	46.93	45.9
CDY10311	Canola	nucleus	48.88	45.1
PGSC0003DMT400049793	Potato	nucleus	45.81	45.05
CDY46606	Canola	nucleus	48.04	44.91
Solyc09g065660.2.1	Tomato	nucleus	46.37	44.62
CDY46607	Canola	nucleus	46.09	44.47
Bra033913.1-P	Field mustard	nucleus	50.56	44.47
Bra023800.1-P	Field mustard	nucleus	49.16	44.22
PGSC0003DMT400049795	Potato	nucleus	44.41	44.17
AT3G63350.1	Thale cress	nucleus	34.64	43.97
CDX94884	Canola	nucleus	35.2	43.9
VIT_05s0020g04090.t01	Wine grape	nucleus	43.02	43.75
PGSC0003DMT400041944	Potato	nucleus	41.62	43.31
Bra001885.1-P	Field mustard	nucleus	47.21	43.22
AT3G22830.1	Thale cress	nucleus	48.88	43.1
CDY11470	Canola	nucleus	34.08	42.81
Bra007739.1-P	Field mustard	nucleus	34.08	42.81
CDX92958	Canola	nucleus	40.22	41.86
CDX76693	Canola	nucleus	33.24	41.75
CDY14893	Canola	nucleus	30.45	41.6
AT5G43840.1	Thale cress	nucleus	32.68	41.49
Bra035993.1-P	Field mustard	nucleus	31.56	40.21
Os01t0733200-01	Rice	nucleus	27.37	39.2
Os06t0565200-00	Rice	nucleus	35.47	38.37
Os02t0232000-01	Rice	nucleus	26.82	32.21
Os01t0571300-01	Rice	mitochondrion, nucleus	34.92	31.09
Os01t0625300-01	Rice	nucleus	29.33	30.97
Os03t0854500-01	Rice	nucleus	42.74	30.24
Os03t0224700-01	Rice	nucleus	34.08	29.76
Os02t0527300-01	Rice	nucleus	38.27	27.51
Os05t0530400-01	Rice	nucleus	34.64	27.02
Os02t0496100-01	Rice	nucleus	34.08	25.68
Os01t0749300-02	Rice	nucleus	31.28	25.45

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ProteinID:AAP53792.1	ProteinID:ABB47624.1	ProteinID:ABB47626.2	EMBL:AK072391
EMBL:AY344488	ProteinID:BAF26531.1	ProteinID:BAT10875.1	ncoils:Coil	ProteinID:EAZ16095.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042802
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	EnsemblPlantsGene:Os10g0419300	EnsemblPlants:Os10t0419300-00
PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF258	UniProt:Q338B0
SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI00001A3BBD	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

HEAT STRESS TRANSCRIPTION FACTOR A2CSimilar to Heat shock transcription factor 31 (Fragment). (Os10t0419300-00)

Coordinates

chr10:-:14746825..14749829

Molecular Weight (calculated)

40786.9 Da

IEP (calculated)

4.653

GRAVY (calculated)

-0.802

Length

358 amino acids

Sequence
(BLAST)

001: MDPAAAGIVK EEMLESQQQQ RQEDGGAAPR PMEGLHEVGP PPFLTKTYDL VEDPATDGVV SWSRAGNSFV VWDPHVFADL LLPRLFKHNN FSSFVRQLNT
101: YGFRKVDPDR WEFANEGFLR GQRHLLKTIK RRKPPSNAPP SQQQSLTSCL EVGEFGFEEE IDRLKRDKNI LITEVVKLRQ EQQATKDHVK AMEDRLRAAE
201: QKQVQMMGFL ARAMRNPEFF QQLAQQKEKR KELEDAISKK RRRPIDNVPF YDPGETSQTE QLDSPYLFDS GVLNELSEPG IPELENLAVN IQDLGKGKVD
301: EERQNQTNGQ AELGDDFWAE LLVEDFTGKE EQSELDGKID GIDELAQQLG YLSSTSPK

Best Arabidopsis Sequence Match ( AT3G22830.1 )
(BLAST)

001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN

Arabidopsis Description

HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.