Factsheet for AT3G22830.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34229	Canola	nucleus	77.59	83.11
CDY10674	Canola	nucleus	79.06	82.52
CDY10311	Canola	nucleus	78.08	81.7
Bra023800.1-P	Field mustard	nucleus	79.31	80.9
Bra033913.1-P	Field mustard	nucleus	80.79	80.59
CDY46606	Canola	nucleus	75.12	79.63
CDX94887	Canola	nucleus	51.48	77.41
CDY46607	Canola	nucleus	69.7	76.28
Bra001885.1-P	Field mustard	nucleus	73.15	75.96
CDX94884	Canola	nucleus	52.96	74.91
CDX92958	Canola	nucleus	63.3	74.71
Solyc06g053960.2.1	Tomato	nucleus	23.65	67.61
KRG91367	Soybean	nucleus	51.97	57.65
KRH31657	Soybean	nucleus	47.54	57.27
Solyc09g082670.2.1	Tomato	nucleus	48.52	55.34
PGSC0003DMT400016511	Potato	nucleus	48.77	54.7
KRH35452	Soybean	nucleus	49.26	54.64
GSMUA_Achr8P20520_001	Banana	nucleus	38.18	53.45
PGSC0003DMT400041944	Potato	nucleus	45.07	53.2
AT3G51910.1	Thale cress	nucleus	35.22	52.57
GSMUA_Achr5P03000_001	Banana	nucleus	41.63	50.6
VIT_05s0020g04090.t01	Wine grape	nucleus	43.1	49.72
Zm00001d032923_P002	Maize	nucleus	43.6	49.58
Os10t0419300-00	Rice	nucleus	43.1	48.88
EER94213	Sorghum	nucleus	42.86	48.07
GSMUA_Achr6P24430_001	Banana	nucleus	36.45	48.05
EER93298	Sorghum	nucleus	39.41	47.2
TraesCS4D01G276500.1	Wheat	nucleus	39.41	46.92
GSMUA_Achr1P27200_001	Banana	nucleus	38.18	46.55
TraesCS4B01G278100.1	Wheat	nucleus	38.92	46.33
AT5G43840.1	Thale cress	nucleus	32.02	46.1
TraesCS4A01G027700.1	Wheat	nucleus	38.42	45.75
HORVU1Hr1G083420.2	Barley	nucleus	41.87	45.7
EER95940	Sorghum	nucleus	41.87	45.7
HORVU4Hr1G073650.2	Barley	nucleus	38.67	45.64
Zm00001d018941_P001	Maize	nucleus	42.12	45.6
TraesCS1A01G375600.2	Wheat	nucleus	40.64	44.84
TraesCS5D01G445100.1	Wheat	nucleus	38.42	44.83
TraesCS5A01G437900.1	Wheat	nucleus	38.18	44.8
TraesCS1B01G396000.1	Wheat	nucleus	39.41	44.69
Os03t0161900-02	Rice	nucleus	41.63	44.59
TraesCS1D01G382900.1	Wheat	nucleus	39.9	44.51
TraesCS5B01G440700.1	Wheat	nucleus	38.42	44.19
Os07t0178600-01	Rice	nucleus	40.39	44.09
Zm00001d027757_P001	Maize	nucleus	41.38	43.75
EER95463	Sorghum	nucleus	42.12	43.73
AT3G63350.1	Thale cress	nucleus	30.3	43.62
AT2G26150.1	Thale cress	nucleus	34.98	41.16
TraesCS2D01G087400.1	Wheat	nucleus	41.38	40.78
TraesCS2B01G105100.1	Wheat	nucleus	40.64	40.74
HORVU5Hr1G094380.1	Barley	nucleus	37.19	40.7
TraesCS2A01G089300.1	Wheat	nucleus	41.13	40.44
HORVU2Hr1G014590.1	Barley	nucleus	41.63	40.43
EER90889	Sorghum	nucleus	36.7	40.16
TraesCS5D01G393200.1	Wheat	nucleus	36.95	39.79
Zm00001d033987_P001	Maize	nucleus	36.21	39.62
TraesCS5A01G383800.1	Wheat	nucleus	36.21	39.52
TraesCS3A01G405200.1	Wheat	nucleus	37.93	38.79
TraesCS3B01G438900.1	Wheat	nucleus	36.95	34.64
HORVU5Hr1G105770.2	Barley	nucleus	39.9	31.09
AT1G32330.1	Thale cress	nucleus	35.47	29.69
AT5G54070.1	Thale cress	nucleus	24.14	29.61
AT3G02990.1	Thale cress	nucleus	33.74	29.27
AT4G17750.1	Thale cress	nucleus	35.47	29.09
AT5G16820.2	Thale cress	nucleus	34.24	28.9
AT3G24520.1	Thale cress	nucleus	23.15	28.48
AT4G18880.1	Thale cress	nucleus	27.09	27.43
AT5G45710.3	Thale cress	nucleus	23.15	27.25
AT5G03720.1	Thale cress	nucleus	26.85	26.46
Zm00001d034433_P003	Maize	nucleus	39.66	25.93
AT4G13980.1	Thale cress	nucleus	26.85	23.39

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:821854	UniProt:A0A178VDE3	ProteinID:AEE76681.1	Symbol:AT-HSFA6B
ArrayExpress:AT3G22830	EnsemblPlantsGene:AT3G22830	RefSeq:AT3G22830	TAIR:AT3G22830	RefSeq:AT3G22830-TAIR-G	EnsemblPlants:AT3G22830.1
TAIR:AT3G22830.1	EMBL:AY045974	EMBL:AY079374	Unigene:At.6312	ProteinID:BAB01258.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	RefSeq:NP_188922.1	ProteinID:OAP02912.1	PFAM:PF00447
PO:PO:0009005	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF139	UniProt:Q9LUH8
SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI00000A21E9	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]

Coordinates

chr3:+:8078789..8081059

Molecular Weight (calculated)

46738.3 Da

IEP (calculated)

4.667

GRAVY (calculated)

-0.902

Length

406 amino acids

Sequence
(BLAST)

001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.