Factsheet for TraesCS3B01G438900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G405200.1	Wheat	nucleus	84.3	91.94
TraesCS2B01G105100.1	Wheat	nucleus	67.44	72.1
Os07t0178600-01	Rice	nucleus	55.2	64.25
EER95940	Sorghum	nucleus	54.27	63.17
Zm00001d018941_P001	Maize	nucleus	53.12	61.33
TraesCS5B01G440700.1	Wheat	nucleus	47.11	57.79
Solyc06g053960.2.1	Tomato	nucleus	17.32	52.82
AT3G51910.1	Thale cress	nucleus	29.79	47.43
Bra012829.1-P	Field mustard	nucleus	26.56	46.37
CDX95313	Canola	nucleus	27.94	45.15
TraesCS1B01G396000.1	Wheat	nucleus	36.95	44.69
TraesCS4B01G278100.1	Wheat	nucleus	34.87	44.28
CDX90626	Canola	nucleus	27.25	43.87
Bra012828.1-P	Field mustard	nucleus	27.02	43.49
CDY29054	Canola	nucleus	26.56	43.4
KRH31657	Soybean	nucleus	33.72	43.32
KRG95588	Soybean	nucleus	36.95	43.24
KRG91367	Soybean	nucleus	36.49	43.17
VIT_00s0179g00150.t01	Wine grape	nucleus	35.8	42.94
CDX90627	Canola	nucleus	28.41	42.86
KRH32059	Soybean	nucleus	32.79	41.64
KRH35452	Soybean	nucleus	34.87	41.26
Solyc09g065660.2.1	Tomato	nucleus	35.33	41.13
KRH67266	Soybean	nucleus	36.49	40.93
PGSC0003DMT400049793	Potato	nucleus	34.18	40.66
Solyc09g082670.2.1	Tomato	nucleus	33.26	40.45
CDX94887	Canola	nucleus	25.17	40.37
VIT_05s0020g04090.t01	Wine grape	nucleus	32.79	40.34
CDY10674	Canola	nucleus	35.8	39.85
PGSC0003DMT400049795	Potato	nucleus	33.03	39.72
AT5G43840.1	Thale cress	nucleus	25.87	39.72
PGSC0003DMT400016511	Potato	nucleus	32.79	39.23
CDY34229	Canola	nucleus	33.95	38.79
CDY14893	Canola	nucleus	23.33	38.55
Bra033913.1-P	Field mustard	nucleus	36.03	38.33
CDY10311	Canola	nucleus	34.18	38.14
TraesCS4B01G383200.1	Wheat	nucleus	20.32	38.1
CDY46607	Canola	nucleus	32.33	37.74
CDX94884	Canola	nucleus	24.94	37.63
CDY46606	Canola	nucleus	33.26	37.6
Bra035993.1-P	Field mustard	nucleus	24.25	37.37
Bra001885.1-P	Field mustard	nucleus	33.72	37.34
AT3G63350.1	Thale cress	nucleus	24.25	37.23
Bra023800.1-P	Field mustard	nucleus	34.18	37.19
AT3G22830.1	Thale cress	nucleus	34.64	36.95
Bra007739.1-P	Field mustard	nucleus	24.25	36.84
CDY11470	Canola	nucleus	24.25	36.84
PGSC0003DMT400041944	Potato	nucleus	28.87	36.34
CDX76693	Canola	nucleus	23.79	36.14
CDX92958	Canola	nucleus	27.71	34.88
TraesCS3B01G314600.1	Wheat	nucleus	18.24	34.8
TraesCS4B01G385800.1	Wheat	nucleus	21.71	34.43
TraesCS3B01G568200.1	Wheat	nucleus	18.01	34.06
TraesCS7B01G272500.1	Wheat	nucleus	20.55	33.84
TraesCS7B01G267300.1	Wheat	nucleus	27.02	33.14
TraesCS4B01G383400.1	Wheat	nucleus	20.32	32.84
TraesCS4B01G383300.1	Wheat	nucleus	20.79	32.73
TraesCS3B01G568300.1	Wheat	nucleus	20.32	32.12
TraesCS3B01G425200.1	Wheat	nucleus	21.48	30.59
TraesCS4B01G239700.1	Wheat	nucleus	27.02	30.47
TraesCS3B01G255600.1	Wheat	nucleus	22.63	30.15
TraesCS5B01G556200.1	Wheat	nucleus	33.03	27.03
TraesCS6B01G127000.1	Wheat	nucleus	25.4	24.18
TraesCS2B01G232000.2	Wheat	nucleus	24.25	22.11
TraesCS3B01G323800.1	Wheat	nucleus	20.32	19.95

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
PANTHER:PTHR10015	PANTHER:PTHR10015:SF139	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS3B01G438900	EnsemblPlants:TraesCS3B01G438900.1
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:+:678018346..678022596

Molecular Weight (calculated)

48008.4 Da

IEP (calculated)

5.055

GRAVY (calculated)

-0.588

Length

433 amino acids

Sequence
(BLAST)

001: MDPMPTLVKE EEDGHGTGES PGATAASRPV KGLRDARPSL FLTKTYDMVD DRSTDDVVSW SAGNNSLVVW DLHHFSTVLL PRHFKHSNFS SFVKQLNTYG
101: FRKVDPDRWE FANEGFLRGQ RHLLKNIRRR RPPANTASNQ QSLGSYLEVG HFGNHTDTDQ LKRDKQLLMA EVVKLRQEQQ SMKTHLKGME ERLHGTERKQ
201: QQMTAFLARV FQKPELLKQL ISLNGVRKEL HDAMSKKRRR SIGQGPEADD MGASGSLEQE SPVLSDPHES VELLGEGSVE LLADGVPSEL ESSAALLADG
301: IPPDLEGAAE LLVDVIPSDL NDSGVDTNGV KPQDFGLGTC EVQQNRAQGA LHDDFWEELM SRALSGEDDN PDNVDDMDVL SEKTDFLVPN NVRGAVAREP
401: AGQRYGWHNF CVDNALNVAC LLARSGTVQL PLL

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.