Factsheet for TraesCS4B01G385800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G373900.2
TraesCS1A01G374100.1
TraesCS1B01G393900.3
TraesCS1B01G394200.1
TraesCS1D01G380600.1
TraesCS1D01G380700.1
TraesCS2A01G007200.1
TraesCS2B01G013500.2
TraesCS2D01G008300.2
TraesCS3A01G210700.1
TraesCS3B01G241300.1
TraesCS3D01G213600.1
TraesCS5A01G193300.2
TraesCS5B01G188700.1
TraesCS5D01G195800.2
TraesCS6A01G051100.1
TraesCS6B01G067600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	TraesCS1A01G373900.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS1A01G374100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G393900.3	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G394200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380700.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2A01G007200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2B01G013500.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS2D01G008300.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS6A01G051100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS6B01G067600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS3A01G210700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3B01G241300.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3D01G213600.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5A01G193300.2	AT3G01300.1	21798944
AT3G24520.1	TraesCS5B01G188700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5D01G195800.2	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G127200.1	Wheat	nucleus	86.81	85.87
TraesCS4B01G383300.1	Wheat	nucleus	71.43	70.91
TraesCS4B01G383200.1	Wheat	nucleus	58.61	69.26
TraesCS3B01G568300.1	Wheat	nucleus	69.23	68.98
TraesCS4B01G383400.1	Wheat	nucleus	67.4	68.66
HORVU4Hr1G090090.4	Barley	nucleus, plastid	73.99	68.01
TraesCS3B01G568200.1	Wheat	nucleus	56.78	67.69
Zm00001d016255_P001	Maize	nucleus	59.34	63.03
KXG29862	Sorghum	nucleus	59.71	61.05
TraesCS7B01G272500.1	Wheat	nucleus	53.85	55.89
Os02t0232000-01	Rice	nucleus	60.81	55.7
GSMUA_Achr4P30990_001	Banana	nucleus	54.58	51.56
GSMUA_Achr10P...	Banana	nucleus	50.92	45.57
TraesCS3B01G314600.1	Wheat	nucleus	37.36	44.93
Bra013253.1-P	Field mustard	nucleus	37.36	36.3
KRH39283	Soybean	nucleus	42.12	35.94
CDX93024	Canola	nucleus	39.93	35.62
Bra015050.1-P	Field mustard	nucleus	39.56	34.95
CDY50608	Canola	nucleus	40.29	34.92
CDX77420	Canola	nucleus	39.56	34.39
CDY39545	Canola	nucleus	39.19	34.08
TraesCS3B01G425200.1	Wheat	nucleus	36.63	32.89
AT3G24520.1	Thale cress	nucleus	39.56	32.73
TraesCS3B01G255600.1	Wheat	nucleus	38.46	32.31
VIT_11s0016g03940.t01	Wine grape	nucleus	38.1	31.61
CDY43158	Canola	nucleus	32.23	28.76
TraesCS7B01G267300.1	Wheat	nucleus	37.0	28.61
TraesCS5B01G440700.1	Wheat	nucleus	37.0	28.61
Solyc12g007070.1.1	Tomato	nucleus	38.46	28.46
TraesCS1B01G396000.1	Wheat	nucleus	37.0	28.21
PGSC0003DMT400001025	Potato	nucleus	37.36	27.72
TraesCS4B01G278100.1	Wheat	nucleus	33.33	26.69
TraesCS4B01G239700.1	Wheat	nucleus	34.07	24.22
TraesCS2B01G105100.1	Wheat	nucleus	34.8	23.46
TraesCS3B01G438900.1	Wheat	nucleus	34.43	21.71
TraesCS6B01G127000.1	Wheat	nucleus	32.97	19.78
TraesCS2B01G232000.2	Wheat	nucleus	34.07	19.58
TraesCS5B01G556200.1	Wheat	nucleus	36.26	18.71
TraesCS3B01G323800.1	Wheat	nucleus	28.94	17.91
CDY43157	Canola	cytosol	0.73	2.22

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF171	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS4B01G385800	EnsemblPlants:TraesCS4B01G385800.1
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:+:664759177..664759998

Molecular Weight (calculated)

29454.5 Da

IEP (calculated)

5.923

GRAVY (calculated)

-0.497

Length

273 amino acids

Sequence
(BLAST)

001: MSGGGMDSSS SSSSGTGGSG AAPFVAKTYG MVDDRATDAV VAWGPAGNSF VVADPFAFSR ALLPAHFKHA NFSSFVRQLN TYGFRKVDPD RWEFAHASFL
101: RGQTHLLPRI VRRQSSKRGK DSREEEEEES SSAALAMEVV RLRKEQRATE ERVAEMWRRV QETERRPKQM LAFLLKVVGD PDVLRRLAGG PGSGGGPDEG
201: AEEVKRPRLL LDGDGAGVDG GLLYHHSGNL MNLGEALVPE EPSVDMYYAG GDGFGGVQAD GGPPYAFHMD TGY

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.