Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24520.1 | EES02317 | AT1G19980.1 | 21798944 |
| AT3G24520.1 | OQU86794 | AT1G19980.1 | 21798944 |
| AT3G24520.1 | EER96629 | AT3G01300.1 | 21798944 |
| AT3G24520.1 | EES03187 | AT3G01300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016255_P001 | Maize | nucleus | 82.02 | 85.21 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 33.71 | 67.16 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 40.45 | 66.67 |
| Os02t0232000-01 | Rice | nucleus | 71.91 | 64.43 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 35.96 | 61.94 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 52.43 | 60.61 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 61.05 | 59.71 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 59.55 | 58.24 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 58.43 | 58.21 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 59.18 | 57.66 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 49.44 | 57.64 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 59.55 | 57.61 |
| TraesCSU01G127300.1 | Wheat | nucleus | 59.18 | 57.45 |
| EER89919 | Sorghum | nucleus | 59.55 | 56.99 |
| TraesCSU01G127200.1 | Wheat | nucleus | 58.8 | 56.88 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 58.05 | 56.57 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 57.68 | 56.0 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 50.94 | 55.97 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 57.68 | 51.85 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 54.68 | 50.52 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 49.06 | 50.0 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 61.05 | 48.51 |
| GSMUA_Achr10P... | Banana | nucleus | 50.94 | 44.59 |
| KXG33312 | Sorghum | nucleus | 39.33 | 40.38 |
| Bra013253.1-P | Field mustard | nucleus | 35.96 | 34.16 |
| CDX93024 | Canola | nucleus | 38.95 | 33.99 |
| KRH39283 | Soybean | nucleus | 40.45 | 33.75 |
| CDY50608 | Canola | nucleus | 39.33 | 33.33 |
| Bra015050.1-P | Field mustard | nucleus | 38.2 | 33.01 |
| CDY39545 | Canola | nucleus | 38.2 | 32.48 |
| CDX77420 | Canola | nucleus | 38.2 | 32.48 |
| EES01103 | Sorghum | nucleus | 43.82 | 32.05 |
| AT3G24520.1 | Thale cress | nucleus | 38.2 | 30.91 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 37.83 | 30.7 |
| Solyc12g007070.1.1 | Tomato | nucleus | 40.07 | 29.0 |
| EER93298 | Sorghum | nucleus | 36.7 | 28.91 |
| PGSC0003DMT400001025 | Potato | nucleus | 39.33 | 28.53 |
| EER94213 | Sorghum | nucleus | 37.83 | 27.9 |
| CDY43158 | Canola | nucleus | 31.84 | 27.78 |
| EER95940 | Sorghum | nucleus | 38.58 | 27.69 |
| EER90889 | Sorghum | nucleus | 36.33 | 26.15 |
| EER95463 | Sorghum | nucleus | 35.21 | 24.04 |
| KXG20211 | Sorghum | nucleus | 35.58 | 22.78 |
| EES00942 | Sorghum | plastid | 32.58 | 22.08 |
| EER95242 | Sorghum | nucleus | 32.96 | 21.2 |
| EES01479 | Sorghum | nucleus | 31.84 | 19.59 |
| EER93074 | Sorghum | nucleus | 36.7 | 18.6 |
| EES06898 | Sorghum | nucleus | 31.46 | 16.94 |
| EES05094 | Sorghum | nucleus | 30.71 | 16.91 |
| EES18551 | Sorghum | nucleus | 29.59 | 16.6 |
| CDY43157 | Canola | cytosol | 0.75 | 2.22 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | UniProt:A0A194YNU0 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | EnsemblPlants:KXG29862 | ProteinID:KXG29862 |
| ProteinID:KXG29862.1 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF171 |
| SMART:SM00415 | EnsemblPlantsGene:SORBI_3004G101400 | SUPFAM:SSF46785 | UniParc:UPI0003C65C98 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:9370582..9372529
Molecular Weight (calculated)
28678.5 Da
IEP (calculated)
6.143
GRAVY (calculated)
-0.336
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSRSMATSR AGVDAAGGVA PFVAKTYRMV DDPATDAVVA WGRDSNSFVV ADPFVFSQTL LPAHFKHSNF SSFVRQLNTY GFRKVDPDRW EFAHVSFLRG
101: QTHLLSQIVR RSSGGGNGGK RNKDDGGGGG GVDEDDAAVA MEVVRLRREQ RAIEEQVAAM WRRVQETERR PKQMLAFLVK VAGDPQVLRR LVSGATAAGT
201: DDAAAATEPQ DAANVKRARL LLDAGGGGSD GAVDFSGFCS TGDEADVGFT DYLLQPPPYV FPVNSGY
101: QTHLLSQIVR RSSGGGNGGK RNKDDGGGGG GVDEDDAAVA MEVVRLRREQ RAIEEQVAAM WRRVQETERR PKQMLAFLVK VAGDPQVLRR LVSGATAAGT
201: DDAAAATEPQ DAANVKRARL LLDAGGGGSD GAVDFSGFCS TGDEADVGFT DYLLQPPPYV FPVNSGY
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.