CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G437900.1	Wheat	nucleus	76.4	74.86
TraesCS5B01G440700.1	Wheat	nucleus	77.58	74.5
TraesCS5D01G445100.1	Wheat	nucleus	75.81	73.85
EER95940	Sorghum	nucleus	69.32	63.17
Solyc06g053960.2.1	Tomato	nucleus	24.19	57.75
HORVU5Hr1G105770.2	Barley	nucleus	78.76	51.25
Zm00001d034433_P003	Maize	nucleus	91.15	49.76
EER94213	Sorghum	nucleus	52.51	49.17
AT3G51910.1	Thale cress	nucleus	39.23	48.9
KRG95588	Soybean	nucleus	50.74	46.49
Bra012829.1-P	Field mustard	nucleus	33.92	46.37
KRH32059	Soybean	nucleus	46.31	46.04
VIT_00s0179g00150.t01	Wine grape	nucleus	48.97	45.98
KRH31657	Soybean	nucleus	45.13	45.4
CDX95313	Canola	nucleus	35.69	45.15
KRH67266	Soybean	nucleus	50.74	44.56
KRG91367	Soybean	nucleus	47.79	44.26
PGSC0003DMT400049793	Potato	nucleus	47.2	43.96
Solyc09g082670.2.1	Tomato	nucleus	45.43	43.26
VIT_05s0020g04090.t01	Wine grape	nucleus	44.54	42.9
KRH35452	Soybean	nucleus	46.31	42.9
PGSC0003DMT400049795	Potato	nucleus	45.43	42.78
CDX90626	Canola	nucleus	33.92	42.75
Bra012828.1-P	Field mustard	nucleus	33.92	42.75
CDY29054	Canola	nucleus	33.04	42.26
Solyc09g065660.2.1	Tomato	nucleus	46.31	42.2
CDX90627	Canola	nucleus	35.69	42.16
EER90889	Sorghum	nucleus	46.02	42.05
PGSC0003DMT400016511	Potato	nucleus	44.84	41.99
EER95463	Sorghum	nucleus	48.08	41.69
CDY14893	Canola	nucleus	32.15	41.6
CDY10674	Canola	nucleus	47.49	41.39
PGSC0003DMT400041944	Potato	nucleus	41.89	41.28
CDY34229	Canola	nucleus	46.02	41.16
CDX94887	Canola	nucleus	32.74	41.11
Bra035993.1-P	Field mustard	nucleus	33.63	40.57
Bra033913.1-P	Field mustard	nucleus	47.79	39.8
AT5G43840.1	Thale cress	nucleus	33.04	39.72
CDY10311	Canola	nucleus	45.43	39.69
CDY46607	Canola	nucleus	43.36	39.62
Bra023800.1-P	Field mustard	nucleus	46.31	39.45
CDY46606	Canola	nucleus	44.54	39.43
AT3G22830.1	Thale cress	nucleus	47.2	39.41
CDY11470	Canola	nucleus	31.86	37.89
Bra007739.1-P	Field mustard	nucleus	31.86	37.89
Bra001885.1-P	Field mustard	nucleus	43.66	37.85
CDX94884	Canola	nucleus	31.86	37.63
AT3G63350.1	Thale cress	nucleus	31.27	37.59
CDX76693	Canola	nucleus	30.97	36.84
KXG29862	Sorghum	nucleus	28.91	36.7
KXG33312	Sorghum	nucleus	27.43	35.77
CDX92958	Canola	nucleus	35.4	34.88
EER89919	Sorghum	nucleus	27.73	33.69
EER95242	Sorghum	nucleus	35.99	29.4
EES00942	Sorghum	plastid	33.04	28.43
EER93074	Sorghum	nucleus	43.66	28.08
EES01103	Sorghum	nucleus	30.09	27.95
EES05094	Sorghum	nucleus	36.28	25.36
EES01479	Sorghum	nucleus	32.15	25.12
KXG20211	Sorghum	nucleus	30.38	24.7
EES06898	Sorghum	nucleus	35.1	23.99
EES18551	Sorghum	nucleus	30.09	21.43

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:8081260	UniProt:C5WX78	InterPro:Caulimo_virion-assoc	ncoils:Coil
EnsemblPlants:EER93298	ProteinID:EER93298	ProteinID:EER93298.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PFAM:PF03310
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	EnsemblPlantsGene:SORBI_3001G057700
SUPFAM:SSF46785	unigene:Sbi.1170	UniParc:UPI0001A82B51	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002466300.1

Description

hypothetical protein

Coordinates

chr1:-:4366254..4370034

Molecular Weight (calculated)

38376.3 Da

IEP (calculated)

5.472

GRAVY (calculated)

-0.751

Length

339 amino acids

Sequence
(BLAST)

001: MNHGNGMLNS VKVESRPSVV ATNGQPRPMD VLHDGGPPPF LTKTYDMVDD PTTDAVVSWS ATSNSFIVWD PHIFGTVLLP RYFKHNNFSS FVRQLNTYGF
101: RKVDPDRWEF ANEEFLRGQR HLLKNIRRRK PPHSSPNQQS LGSYLEVGHF GYEEEIDQLK RDKQLLMTEV VKLRQEQQNT KSDLQAMEEK LQDTEQKQQQ
201: MMAFMARVMQ NPDFMRQLIS QREMRKELED AISKKRRRRI VQGPEADSMG TGSSLEQGSQ VVFEPLEPVE SLANGVPSDL GSSSVEAKGF EVQQGVSSCG
301: SERLNGKPTA ELNDDFWEDL LHEGGLGAGN AVGQDDMKM

Best Arabidopsis Sequence Match ( AT3G22830.1 )
(BLAST)

001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN

Arabidopsis Description

HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.