CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032923_P002	Maize	nucleus	90.06	91.32
Os10t0419300-00	Rice	nucleus	80.39	81.28
TraesCS1B01G396000.1	Wheat	nucleus	74.31	75.14
HORVU1Hr1G083420.2	Barley	nucleus	77.07	75.0
TraesCS1A01G375600.2	Wheat	nucleus	75.97	74.73
TraesCS1D01G382900.1	Wheat	nucleus	74.86	74.45
Solyc06g053960.2.1	Tomato	nucleus	22.93	58.45
EER95463	Sorghum	nucleus	60.22	55.75
GSMUA_Achr6P24430_001	Banana	nucleus	47.24	55.52
CDX95313	Canola	nucleus	39.5	53.36
Bra012829.1-P	Field mustard	nucleus	36.46	53.23
AT3G51910.1	Thale cress	nucleus	39.5	52.57
GSMUA_Achr1P27200_001	Banana	nucleus	48.34	52.55
EER93298	Sorghum	nucleus	49.17	52.51
VIT_00s0179g00150.t01	Wine grape	nucleus	50.83	50.97
Bra012828.1-P	Field mustard	nucleus	37.85	50.93
CDX90626	Canola	nucleus	37.57	50.56
CDY29054	Canola	nucleus	36.74	50.19
KRG95588	Soybean	nucleus	50.83	49.73
EER95940	Sorghum	nucleus	50.28	48.92
KRH67266	Soybean	nucleus	51.93	48.7
KRH32059	Soybean	nucleus	45.3	48.09
CDX90627	Canola	nucleus	38.12	48.08
CDX94887	Canola	nucleus	35.64	47.78
EER90889	Sorghum	nucleus	48.62	47.44
KRG91367	Soybean	nucleus	47.79	47.27
KRH31657	Soybean	nucleus	43.09	46.29
Solyc09g082670.2.1	Tomato	nucleus	45.03	45.79
PGSC0003DMT400016511	Potato	nucleus	45.3	45.3
CDY34229	Canola	nucleus	46.96	44.85
PGSC0003DMT400049793	Potato	nucleus	45.03	44.78
Solyc09g065660.2.1	Tomato	nucleus	45.86	44.62
KRH35452	Soybean	nucleus	45.03	44.54
CDY10674	Canola	nucleus	47.79	44.47
PGSC0003DMT400049795	Potato	nucleus	44.2	44.44
VIT_05s0020g04090.t01	Wine grape	nucleus	42.82	44.03
CDY46606	Canola	nucleus	46.41	43.86
CDY46607	Canola	nucleus	44.75	43.67
AT3G63350.1	Thale cress	nucleus	33.98	43.62
CDY10311	Canola	nucleus	46.41	43.3
CDX94884	Canola	nucleus	34.25	43.21
Bra033913.1-P	Field mustard	nucleus	48.34	43.0
Bra023800.1-P	Field mustard	nucleus	47.24	42.96
AT5G43840.1	Thale cress	nucleus	33.43	42.91
AT3G22830.1	Thale cress	nucleus	48.07	42.86
CDX76693	Canola	nucleus	33.43	42.46
CDY11470	Canola	nucleus	33.43	42.46
Bra007739.1-P	Field mustard	nucleus	33.43	42.46
Bra001885.1-P	Field mustard	nucleus	45.86	42.46
PGSC0003DMT400041944	Potato	nucleus	40.33	42.44
CDY14893	Canola	nucleus	30.66	42.37
CDX92958	Canola	nucleus	38.95	40.99
Bra035993.1-P	Field mustard	nucleus	31.77	40.93
KXG29862	Sorghum	nucleus	27.9	37.83
KXG33312	Sorghum	nucleus	27.07	37.69
EER89919	Sorghum	nucleus	27.35	35.48
EES00942	Sorghum	plastid	33.43	30.71
EER95242	Sorghum	nucleus	33.98	29.64
KXG20211	Sorghum	nucleus	33.43	29.02
EES01103	Sorghum	nucleus	28.73	28.49
EER93074	Sorghum	nucleus	41.44	28.46
EES06898	Sorghum	nucleus	37.57	27.42
EES01479	Sorghum	nucleus	30.39	25.35
EES05094	Sorghum	nucleus	33.15	24.74
EES18551	Sorghum	nucleus	29.83	22.69

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:8059440	UniProt:C5X1F4	ncoils:Coil	EnsemblPlants:EER94213
ProteinID:EER94213	ProteinID:EER94213.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042802	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF258	SMART:SM00415	EnsemblPlantsGene:SORBI_3001G243000
SUPFAM:SSF46785	unigene:Sbi.8410	UniParc:UPI0001A83268	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002467215.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:25122077..25124522

Molecular Weight (calculated)

41005.3 Da

IEP (calculated)

4.597

GRAVY (calculated)

-0.699

Length

362 amino acids

Sequence
(BLAST)

001: MDPSVAPGIV KEELLEQQQP LQDGVGDGGG APRPMEGLHE VGPPPFLTKT FDLVEDPATD AVVSWSRAGN SFVVWDPHVF ADTMLPRLFK HSNFSSFVRQ
101: LNTYGFRKVD PDRWEFANEG FLRGQRHLLK MIKRRKPPSA VPPLRQQQAP ASCLEVGEFG FEEEIDRLKR DKNILITEVV KLRQEQQTTK DHVRAMEERL
201: RVAEQKQVQM MGFLARAMRN PEFFQQLVQQ QDKRKELEDA ISKKRRRPID NTPFYSTGET SQGEQLDSQF MFESDVLNGL SEPGMPELEN LAVNIQELGK
301: GSIDGEKVAQ ASDQSELNDD FWAELLVEDF GDKAGQSELE GRTEDVDDLA QQLGYLSNSS PK

Best Arabidopsis Sequence Match ( AT3G22830.1 )
(BLAST)

001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN

Arabidopsis Description

HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.