Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G382900.1 | Wheat | nucleus | 96.37 | 94.78 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 94.41 | 91.85 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 90.22 | 86.83 |
| Os10t0419300-00 | Rice | nucleus | 75.7 | 75.7 |
| EER94213 | Sorghum | nucleus | 75.14 | 74.31 |
| Zm00001d032923_P002 | Maize | nucleus | 69.83 | 70.03 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 58.94 | 61.88 |
| Solyc06g053960.2.1 | Tomato | nucleus | 22.91 | 57.75 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 44.41 | 51.62 |
| Bra012829.1-P | Field mustard | nucleus | 35.47 | 51.21 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 45.53 | 48.95 |
| AT3G51910.1 | Thale cress | nucleus | 37.15 | 48.9 |
| CDX95313 | Canola | nucleus | 36.59 | 48.88 |
| TraesCS5B01G440700.1 | Wheat | nucleus | 47.77 | 48.44 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 47.77 | 47.37 |
| CDX90626 | Canola | nucleus | 35.47 | 47.21 |
| Bra012828.1-P | Field mustard | nucleus | 35.47 | 47.21 |
| CDY29054 | Canola | nucleus | 34.92 | 47.17 |
| KRG95588 | Soybean | nucleus | 47.77 | 46.22 |
| KRH67266 | Soybean | nucleus | 49.72 | 46.11 |
| CDX90627 | Canola | nucleus | 36.87 | 45.99 |
| CDX94887 | Canola | nucleus | 34.36 | 45.56 |
| KRH31657 | Soybean | nucleus | 42.74 | 45.4 |
| KRG91367 | Soybean | nucleus | 46.09 | 45.08 |
| KRH32059 | Soybean | nucleus | 42.46 | 44.57 |
| KRH35452 | Soybean | nucleus | 44.69 | 43.72 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 49.44 | 43.7 |
| PGSC0003DMT400049793 | Potato | nucleus | 43.58 | 42.86 |
| Solyc09g082670.2.1 | Tomato | nucleus | 42.46 | 42.7 |
| PGSC0003DMT400016511 | Potato | nucleus | 43.02 | 42.54 |
| PGSC0003DMT400049795 | Potato | nucleus | 42.74 | 42.5 |
| Solyc09g065660.2.1 | Tomato | nucleus | 44.13 | 42.47 |
| CDY34229 | Canola | nucleus | 44.13 | 41.69 |
| CDY10674 | Canola | nucleus | 44.97 | 41.39 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 40.5 | 41.19 |
| CDX94884 | Canola | nucleus | 32.96 | 41.12 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 25.98 | 40.97 |
| AT5G43840.1 | Thale cress | nucleus | 32.12 | 40.78 |
| Bra001885.1-P | Field mustard | nucleus | 44.41 | 40.66 |
| CDY10311 | Canola | nucleus | 43.85 | 40.46 |
| CDY46606 | Canola | nucleus | 43.02 | 40.21 |
| CDY46607 | Canola | nucleus | 41.62 | 40.16 |
| PGSC0003DMT400041944 | Potato | nucleus | 38.55 | 40.12 |
| AT3G63350.1 | Thale cress | nucleus | 31.56 | 40.07 |
| CDY11470 | Canola | nucleus | 31.84 | 40.0 |
| Bra007739.1-P | Field mustard | nucleus | 31.84 | 40.0 |
| CDX76693 | Canola | nucleus | 31.84 | 40.0 |
| Bra033913.1-P | Field mustard | nucleus | 45.25 | 39.8 |
| Bra023800.1-P | Field mustard | nucleus | 44.13 | 39.7 |
| AT3G22830.1 | Thale cress | nucleus | 44.69 | 39.41 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 25.42 | 39.39 |
| CDX92958 | Canola | nucleus | 37.71 | 39.24 |
| CDY14893 | Canola | nucleus | 28.49 | 38.93 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 27.65 | 37.64 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 24.02 | 37.55 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 27.93 | 37.31 |
| Bra035993.1-P | Field mustard | nucleus | 29.05 | 37.01 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 28.21 | 37.0 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 44.69 | 36.95 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 27.93 | 36.36 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 27.37 | 35.77 |
| TraesCS7B01G267300.1 | Wheat | nucleus | 33.52 | 33.99 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 27.09 | 31.91 |
| TraesCS4B01G239700.1 | Wheat | nucleus | 33.24 | 30.99 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 27.65 | 30.46 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 43.58 | 29.49 |
| TraesCS6B01G127000.1 | Wheat | nucleus | 34.92 | 27.47 |
| TraesCS2B01G232000.2 | Wheat | nucleus | 33.24 | 25.05 |
| TraesCS3B01G323800.1 | Wheat | nucleus | 29.61 | 24.04 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042802 | GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 |
| PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF258 | SMART:SM00415 |
| SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS1B01G396000 | EnsemblPlants:TraesCS1B01G396000.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chr1B:-:627926916..627929186
Molecular Weight (calculated)
40392.3 Da
IEP (calculated)
4.626
GRAVY (calculated)
-0.746
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAVAGGVV KEEELLLHEE QPPAGPQQQD GALPRPMEGL HEAGPPPFLT KTYDLVEDPA TDQVVSWGRA GNTFVVWDPH VFAEALLPRL FKHSNFSSFV
101: RQLNTYGFRK VDPDRWEFAN EGFLRGQRHL LKMIKRRKPP SNAPSSQQQA LTSCLEVGEF GFEEEIDRLK RDKNLLITEV VKLRQEQQAT KDNVQAMEGR
201: LRAAEQRQAQ MMGFLARAMC NPHFFQQLVQ KQDKRKELED AISKKRRRPI DNAPFYGPAA TTSQSEQLDS QFLFDSGVLS EPGMNGMENL AQNIQELGQG
301: KTDEEKKDEA NGQLDINNDF WAELFSDDFG DGDGSGLSEL EGRRPEDIDE LAQQLGFS
101: RQLNTYGFRK VDPDRWEFAN EGFLRGQRHL LKMIKRRKPP SNAPSSQQQA LTSCLEVGEF GFEEEIDRLK RDKNLLITEV VKLRQEQQAT KDNVQAMEGR
201: LRAAEQRQAQ MMGFLARAMC NPHFFQQLVQ KQDKRKELED AISKKRRRPI DNAPFYGPAA TTSQSEQLDS QFLFDSGVLS EPGMNGMENL AQNIQELGQG
301: KTDEEKKDEA NGQLDINNDF WAELFSDDFG DGDGSGLSEL EGRRPEDIDE LAQQLGFS
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.