Factsheet for TraesCS3B01G568200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G373900.2
TraesCS1A01G374100.1
TraesCS1B01G393900.3
TraesCS1B01G394200.1
TraesCS1D01G380600.1
TraesCS1D01G380700.1
TraesCS2A01G007200.1
TraesCS2B01G013500.2
TraesCS2D01G008300.2
TraesCS3A01G210700.1
TraesCS3B01G241300.1
TraesCS3D01G213600.1
TraesCS5A01G193300.2
TraesCS5B01G188700.1
TraesCS5D01G195800.2
TraesCS6A01G051100.1
TraesCS6B01G067600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	TraesCS1A01G373900.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS1A01G374100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G393900.3	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G394200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380700.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2A01G007200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2B01G013500.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS2D01G008300.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS6A01G051100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS6B01G067600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS3A01G210700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3B01G241300.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3D01G213600.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5A01G193300.2	AT3G01300.1	21798944
AT3G24520.1	TraesCS5B01G188700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5D01G195800.2	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G383200.1	Wheat	nucleus	78.6	77.92
TraesCS4B01G383300.1	Wheat	nucleus	82.1	68.36
TraesCS3B01G568300.1	Wheat	nucleus	81.66	68.25
TraesCS4B01G383400.1	Wheat	nucleus	74.67	63.81
TraesCS4B01G385800.1	Wheat	nucleus	67.69	56.78
HORVU4Hr1G090850.1	Barley	nucleus	76.86	52.38
Zm00001d016255_P001	Maize	nucleus	56.77	50.58
KXG29862	Sorghum	nucleus	57.64	49.44
TraesCS7B01G272500.1	Wheat	nucleus	55.02	47.91
Os02t0232000-01	Rice	nucleus	61.14	46.98
GSMUA_Achr4P30990_001	Banana	nucleus	52.84	41.87
TraesCS3B01G314600.1	Wheat	nucleus	39.3	39.65
GSMUA_Achr10P...	Banana	nucleus	52.4	39.34
Bra013253.1-P	Field mustard	nucleus	38.86	31.67
KRH39283	Soybean	nucleus	41.48	29.69
CDX93024	Canola	nucleus	38.86	29.09
Bra015050.1-P	Field mustard	nucleus	38.86	28.8
CDX77420	Canola	nucleus	38.86	28.34
CDY39545	Canola	nucleus	38.86	28.34
CDY50608	Canola	nucleus	38.43	27.94
AT3G24520.1	Thale cress	nucleus	40.17	27.88
TraesCS3B01G425200.1	Wheat	nucleus	36.24	27.3
TraesCS3B01G255600.1	Wheat	nucleus	37.55	26.46
VIT_11s0016g03940.t01	Wine grape	nucleus	37.99	26.44
TraesCS7B01G267300.1	Wheat	nucleus	37.99	24.65
TraesCS5B01G440700.1	Wheat	nucleus	37.55	24.36
TraesCS1B01G396000.1	Wheat	nucleus	37.55	24.02
Solyc12g007070.1.1	Tomato	nucleus	37.99	23.58
PGSC0003DMT400001025	Potato	nucleus	37.55	23.37
CDY43158	Canola	nucleus	31.0	23.2
TraesCS4B01G278100.1	Wheat	nucleus	33.19	22.29
TraesCS2B01G105100.1	Wheat	nucleus	37.12	20.99
TraesCS4B01G239700.1	Wheat	nucleus	32.75	19.53
TraesCS3B01G438900.1	Wheat	nucleus	34.06	18.01
TraesCS2B01G232000.2	Wheat	nucleus	34.5	16.63
TraesCS6B01G127000.1	Wheat	nucleus	32.31	16.26
TraesCS5B01G556200.1	Wheat	nucleus	35.81	15.5
TraesCS3B01G323800.1	Wheat	nucleus	29.26	15.19
CDY43157	Canola	cytosol	1.31	3.33

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015
PANTHER:PTHR10015:SF171	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS3B01G568200	EnsemblPlants:TraesCS3B01G568200.1	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:799926951..799927640

Molecular Weight (calculated)

25564.4 Da

IEP (calculated)

4.852

GRAVY (calculated)

-0.369

Length

229 amino acids

Sequence
(BLAST)

001: MVDDPAMDAM VAWGSASNSF AVTDPFAFSE MLLPTHFKHS NFSSFVPQVN TYGFRKVNPD RWEFADAFFL RGQMHLLPRI VRRWNGGKRG KEDAGEGDED
101: ISSKMLAMEV VRLKEEQRAT KDRLAAMWRP VQDAECRPKL MLAFLLKVVG DPDVLRRLVG NLSSNDGLFP GEGAETKRPR LLLNGEAQMQ DAFVGEPGVD
201: FTGFYTGGDG FSEVPVDNPP YAFPMDTGY

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.