Factsheet for TraesCS7B01G272500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G373900.2
TraesCS1A01G374100.1
TraesCS1B01G393900.3
TraesCS1B01G394200.1
TraesCS1D01G380600.1
TraesCS1D01G380700.1
TraesCS2A01G007200.1
TraesCS2B01G013500.2
TraesCS2D01G008300.2
TraesCS3A01G210700.1
TraesCS3B01G241300.1
TraesCS3D01G213600.1
TraesCS5A01G193300.2
TraesCS5B01G188700.1
TraesCS5D01G195800.2
TraesCS6A01G051100.1
TraesCS6B01G067600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	TraesCS1A01G373900.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS1A01G374100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G393900.3	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G394200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380700.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2A01G007200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2B01G013500.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS2D01G008300.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS6A01G051100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS6B01G067600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS3A01G210700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3B01G241300.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3D01G213600.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5A01G193300.2	AT3G01300.1	21798944
AT3G24520.1	TraesCS5B01G188700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5D01G195800.2	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G367700.1	Wheat	nucleus	98.1	97.36
HORVU7Hr1G088920.3	Barley	nucleus	95.44	94.36
TraesCS7A01G355300.1	Wheat	nucleus	95.06	93.98
Zm00001d046299_P001	Maize	nucleus	74.52	73.41
EER89919	Sorghum	nucleus	77.19	72.76
TraesCS4B01G383200.1	Wheat	nucleus	51.71	58.87
TraesCS3B01G568200.1	Wheat	nucleus	47.91	55.02
TraesCS4B01G383300.1	Wheat	nucleus	57.41	54.91
TraesCS4B01G383400.1	Wheat	nucleus	55.89	54.85
TraesCS4B01G385800.1	Wheat	nucleus	55.89	53.85
TraesCS3B01G568300.1	Wheat	nucleus	55.89	53.65
GSMUA_Achr4P30990_001	Banana	nucleus	50.95	46.37
GSMUA_Achr10P...	Banana	nucleus	48.29	41.64
TraesCS3B01G314600.1	Wheat	nucleus	34.22	39.65
KRH39283	Soybean	nucleus	40.3	33.12
Bra013253.1-P	Field mustard	nucleus	34.98	32.74
Bra015050.1-P	Field mustard	nucleus	38.4	32.69
CDX77420	Canola	nucleus	38.78	32.48
CDX93024	Canola	nucleus	37.64	32.35
CDY39545	Canola	nucleus	38.4	32.17
CDY50608	Canola	nucleus	38.02	31.75
AT3G24520.1	Thale cress	nucleus	39.16	31.21
VIT_11s0016g03940.t01	Wine grape	nucleus	38.4	30.7
TraesCS3B01G255600.1	Wheat	nucleus	37.64	30.46
TraesCS3B01G425200.1	Wheat	nucleus	34.6	29.93
PGSC0003DMT400001025	Potato	nucleus	40.68	29.08
Solyc12g007070.1.1	Tomato	nucleus	39.92	28.46
TraesCS1B01G396000.1	Wheat	nucleus	37.64	27.65
TraesCS5B01G440700.1	Wheat	nucleus	36.5	27.2
CDY43158	Canola	nucleus	30.8	26.47
TraesCS4B01G278100.1	Wheat	nucleus	33.84	26.1
TraesCS7B01G267300.1	Wheat	nucleus	34.22	25.5
TraesCS2B01G105100.1	Wheat	nucleus	36.88	23.95
TraesCS4B01G239700.1	Wheat	nucleus	31.18	21.35
TraesCS3B01G438900.1	Wheat	nucleus	33.84	20.55
TraesCS6B01G127000.1	Wheat	nucleus	31.94	18.46
TraesCS3B01G323800.1	Wheat	nucleus	30.42	18.14
TraesCS2B01G232000.2	Wheat	nucleus	32.32	17.89
TraesCS5B01G556200.1	Wheat	nucleus	33.46	16.64
CDY43157	Canola	cytosol	0.76	2.22

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF257	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS7B01G272500	EnsemblPlants:TraesCS7B01G272500.1
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7B:+:500169640..500170973

Molecular Weight (calculated)

28045.0 Da

IEP (calculated)

6.529

GRAVY (calculated)

-0.298

Length

263 amino acids

Sequence
(BLAST)

001: MAAASVGGGA APFVWKTYRM VEDPGTDGVI GWGKGNNSFV VADPFVFSQT MLPAHFKHNN FSSFVRQLNT YGFRKVDPDR WEFAHGSFLR GQTHLLRNIV
101: RRGTPAPGGG GKRKDAGAAG LTDDDMTMVA TEVVRLKKEQ STIDDRVAAM WRRVQETERK PKQMLAFLLT IVGDRDTLQR LVGNSGNAAG GDQEPVEGGE
201: KRARLLLDGD FGNVSAFGPD AVDFAGFYTD DAFANAPVPV EAAAGSGGGG AGCTFAFGVD SGY

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.