Factsheet for HORVU7Hr1G088920.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G001310.16
HORVU3Hr1G051080.3
HORVU5Hr1G056920.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	HORVU2Hr1G001310.16	AT1G19980.1	21798944
AT3G24520.1	HORVU3Hr1G051080.3	AT3G01300.1	21798944
AT3G24520.1	HORVU5Hr1G056920.1	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G367700.1	Wheat	nucleus	95.11	95.47
TraesCS7B01G272500.1	Wheat	nucleus	94.36	95.44
TraesCS7A01G355300.1	Wheat	nucleus	93.98	93.98
Zm00001d046299_P001	Maize	nucleus	74.81	74.53
EER89919	Sorghum	nucleus	76.69	73.12
HORVU7Hr1G055320.1	Barley	mitochondrion, nucleus	36.84	60.49
HORVU7Hr1G034320.1	Barley	nucleus, plastid	30.08	59.7
HORVU2Hr1G043030.1	Barley	nucleus	33.83	58.06
HORVU7Hr1G119990.1	Barley	nucleus	46.24	50.62
HORVU4Hr1G090090.4	Barley	nucleus, plastid	53.01	47.47
GSMUA_Achr4P30990_001	Banana	nucleus	50.38	46.37
HORVU4Hr1G090850.1	Barley	nucleus	57.14	45.24
GSMUA_Achr10P...	Banana	nucleus	48.12	41.97
Bra013253.1-P	Field mustard	nucleus	35.71	33.81
Bra015050.1-P	Field mustard	nucleus	38.35	33.01
CDX93024	Canola	nucleus	37.97	33.01
KRH39283	Soybean	nucleus	39.47	32.81
CDX77420	Canola	nucleus	38.35	32.48
CDY50608	Canola	nucleus	38.35	32.38
CDY39545	Canola	nucleus	37.97	32.17
AT3G24520.1	Thale cress	nucleus	39.47	31.82
HORVU3Hr1G088890.2	Barley	nucleus	33.08	30.45
VIT_11s0016g03940.t01	Wine grape	nucleus	37.59	30.4
HORVU3Hr1G055960.1	Barley	nucleus	36.84	29.97
PGSC0003DMT400001025	Potato	nucleus	39.47	28.53
Solyc12g007070.1.1	Tomato	nucleus	38.72	27.91
HORVU1Hr1G083420.2	Barley	nucleus	37.97	27.15
HORVU3Hr1G069590.4	Barley	nucleus, plastid	23.31	26.16
CDY43158	Canola	nucleus	30.08	26.14
HORVU4Hr1G073650.2	Barley	nucleus	33.08	25.58
HORVU7Hr1G087690.1	Barley	nucleus	32.33	23.56
HORVU5Hr1G094380.1	Barley	nucleus	32.33	23.18
HORVU2Hr1G014590.1	Barley	nucleus	35.71	22.73
HORVU5Hr1G105770.2	Barley	nucleus	36.47	18.62
HORVU1Hr1G081300.1	Barley	nucleus	29.7	18.33
HORVU6Hr1G017910.1	Barley	nucleus	30.83	17.94
HORVU3Hr1G071550.3	Barley	nucleus	28.57	17.59
HORVU0Hr1G008940.2	Barley	cytosol, nucleus	17.67	16.04
HORVU5Hr1G123770.1	Barley	nucleus	33.08	15.33
CDY43157	Canola	cytosol	0.75	2.22

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EMBL:AK354435	EMBL:AK358136	EMBL:AK370399	UniProt:F2CS33
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EMBL:HM446041	EnsemblPlantsGene:HORVU7Hr1G088920
EnsemblPlants:HORVU7Hr1G088920.3	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF257	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI000200457B
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

Heat shock factor C2b [Source:UniProtKB/TrEMBL;Acc:F2CS33]

Coordinates

chrchr7H:-:539971554..539973610

Molecular Weight (calculated)

28278.2 Da

IEP (calculated)

6.529

GRAVY (calculated)

-0.225

Length

266 amino acids

Sequence
(BLAST)

001: MAAAAASVGG GAAPFVWKTY RMVEDPGTDG VIGWGKGNNS FVVADPFVFS QTMLPAHFKH NNFSSFVRQL NTYGFRKVDP DRWEFAHGSF LRGQTHLLRN
101: IVRRGTAVAG GGGKRKDASA ADLTGDDMTM VATEVVRLKK EQSTIDDRVA AMWRRVQETE RKPKQMLAFL LTIVGDRDTL QRLVANSGNA ASGDQEPVEG
201: GEKRARLLLD GDFGNVSAFG PDAVDFAGFY ADGDAFANVP VPVEAAAGSG GGGAGCSFAF GVDSGY

Best Arabidopsis Sequence Match ( AT1G32330.2 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SR

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.