Factsheet for HORVU3Hr1G088890.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G001310.16
HORVU3Hr1G051080.3
HORVU5Hr1G056920.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	HORVU2Hr1G001310.16	AT1G19980.1	21798944
AT3G24520.1	HORVU3Hr1G051080.3	AT3G01300.1	21798944
AT3G24520.1	HORVU5Hr1G056920.1	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G393200.1	Wheat	nucleus	85.47	78.66
TraesCS3B01G425200.1	Wheat	nucleus	81.31	77.3
TraesCS3D01G386000.1	Wheat	nucleus	83.39	76.75
TraesCS3A01G393100.1	Wheat	nucleus	74.74	76.6
TraesCS3D01G385900.1	Wheat	nucleus	80.28	75.82
HORVU3Hr1G055960.1	Barley	nucleus	82.35	72.78
Os01t0625300-01	Rice	nucleus	66.78	56.93
Zm00001d044168_P001	Maize	nucleus	62.63	54.68
EES01103	Sorghum	nucleus	65.4	51.78
HORVU7Hr1G034320.1	Barley	nucleus, plastid	23.88	51.49
HORVU7Hr1G055320.1	Barley	mitochondrion, nucleus	28.72	51.23
Zm00001d011406_P001	Maize	nucleus	62.63	46.77
HORVU2Hr1G043030.1	Barley	nucleus	24.22	45.16
GSMUA_Achr3P15740_001	Banana	nucleus	40.83	42.75
GSMUA_Achr7P24790_001	Banana	nucleus	27.68	38.28
HORVU7Hr1G119990.1	Barley	nucleus	31.14	37.04
GSMUA_Achr3P31860_001	Banana	nucleus	39.1	34.88
HORVU4Hr1G090090.4	Barley	nucleus, plastid	35.64	34.68
HORVU7Hr1G088920.3	Barley	nucleus	30.45	33.08
GSMUA_Achr8P27820_001	Banana	nucleus	40.48	32.23
CDX93024	Canola	nucleus	32.53	30.72
HORVU4Hr1G090850.1	Barley	nucleus	35.29	30.36
Bra013253.1-P	Field mustard	nucleus	29.07	29.89
CDY50608	Canola	nucleus	32.53	29.84
Bra015050.1-P	Field mustard	nucleus	31.83	29.77
KRH39283	Soybean	nucleus	32.87	29.69
CDX77420	Canola	nucleus	31.83	29.3
CDY39545	Canola	nucleus	31.83	29.3
VIT_11s0016g03940.t01	Wine grape	nucleus	33.22	29.18
AT3G24520.1	Thale cress	nucleus	31.83	27.88
CDY43158	Canola	nucleus	29.07	27.45
HORVU3Hr1G069590.4	Barley	nucleus, plastid	21.45	26.16
HORVU1Hr1G083420.2	Barley	nucleus	33.22	25.81
Solyc12g007070.1.1	Tomato	nucleus	32.53	25.47
PGSC0003DMT400001025	Potato	nucleus	32.18	25.27
HORVU4Hr1G073650.2	Barley	nucleus	29.76	25.0
HORVU5Hr1G094380.1	Barley	nucleus	31.83	24.8
HORVU7Hr1G087690.1	Barley	nucleus	30.45	24.11
HORVU2Hr1G014590.1	Barley	nucleus	31.83	22.01
HORVU1Hr1G081300.1	Barley	nucleus	27.34	18.33
HORVU5Hr1G105770.2	Barley	nucleus	32.53	18.04
HORVU3Hr1G071550.3	Barley	nucleus	26.3	17.59
HORVU6Hr1G017910.1	Barley	nucleus	27.34	17.29
HORVU5Hr1G123770.1	Barley	nucleus	32.18	16.2
HORVU0Hr1G008940.2	Barley	cytosol, nucleus	16.26	16.04
CDY43157	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	UniProt:A0A287M5S1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU3Hr1G088890	EnsemblPlants:HORVU3Hr1G088890.2	InterPro:HSF_DNA-bd	InterPro:HSF_fam
InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF187
SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI000B47A5F9	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chrchr3H:+:626284998..626285973

Molecular Weight (calculated)

32288.4 Da

IEP (calculated)

7.641

GRAVY (calculated)

-0.531

Length

289 amino acids

Sequence
(BLAST)

001: MDGLHTELAL GLIGELQTAP FVAKTYQMVC DPRTDALVRW GTDNNSFLVA DVAGFSRHLL PCFFKHGNFS SFVRQLNSYG FRKVHPDRWE FAHESFLRGQ
101: THLLLRIVRR KKKRGETSCS SVVGGGGGGE QHVMANIGEE VEEEEDDEGK EALLEEVQRL RQQQTAIGEQ LARMSRRLQA TERRSDRLMP FLARLDEDPK
201: ATSPRLLQQA PEKQRQRMQF PSRDFTSFPV ALQPAPSPPL ALGDAAMAGA RVRQWAEPMA PLKLTTFEQP SASYGVRQVP EIEGGGSAS

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.