Factsheet for Zm00001d011406_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005647_P002
Zm00001d020213_P003
Zm00001d039489_P002
Zm00001d044324_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	Zm00001d039489_P002	AT1G19980.1	21798944
AT3G24520.1	Zm00001d005647_P002	AT3G01300.1	21798944
AT3G24520.1	Zm00001d020213_P003	AT3G01300.1	21798944
AT3G24520.1	Zm00001d044324_P001	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044168_P001	Maize	nucleus	69.25	80.97
EES01103	Sorghum	nucleus	75.71	80.27
Os01t0625300-01	Rice	nucleus	58.4	66.67
TraesCS3B01G425200.1	Wheat	nucleus	51.94	66.12
TraesCS3D01G227200.1	Wheat	nucleus	54.78	66.04
TraesCS3A01G393200.1	Wheat	nucleus	53.49	65.92
TraesCS3B01G255600.1	Wheat	nucleus	55.04	65.54
HORVU3Hr1G055960.1	Barley	nucleus	55.3	65.44
TraesCS3A01G229000.1	Wheat	nucleus	54.78	65.23
TraesCS3D01G385900.1	Wheat	nucleus	51.42	65.03
TraesCS3A01G393100.1	Wheat	nucleus	47.03	64.54
TraesCS3D01G386000.1	Wheat	nucleus	51.68	63.69
HORVU3Hr1G088890.2	Barley	nucleus	46.77	62.63
GSMUA_Achr3P15740_001	Banana	nucleus	34.37	48.19
Zm00001d043536_P001	Maize	nucleus	29.2	45.38
Zm00001d016255_P001	Maize	nucleus	29.2	43.97
GSMUA_Achr7P24790_001	Banana	nucleus	23.51	43.54
GSMUA_Achr3P31860_001	Banana	nucleus	35.92	42.9
Zm00001d046299_P001	Maize	nucleus	27.65	40.07
GSMUA_Achr8P27820_001	Banana	nucleus	33.59	35.81
Bra015050.1-P	Field mustard	nucleus	25.84	32.36
CDX93024	Canola	nucleus	25.58	32.35
KRH39283	Soybean	nucleus	26.61	32.19
Bra013253.1-P	Field mustard	nucleus	23.26	32.03
CDX77420	Canola	nucleus	25.84	31.85
CDY39545	Canola	nucleus	25.84	31.85
CDY50608	Canola	nucleus	25.84	31.75
VIT_11s0016g03940.t01	Wine grape	nucleus	26.36	31.0
AT3G24520.1	Thale cress	nucleus	26.1	30.61
CDY43158	Canola	nucleus	24.03	30.39
Zm00001d018941_P001	Maize	nucleus	27.65	28.53
Zm00001d032923_P002	Maize	nucleus	25.58	27.73
Solyc12g007070.1.1	Tomato	nucleus	26.1	27.37
PGSC0003DMT400001025	Potato	nucleus	25.58	26.9
Zm00001d046204_P001	Maize	nucleus	24.55	26.03
Zm00001d027757_P001	Maize	nucleus	25.58	25.78
Zm00001d033987_P001	Maize	nucleus	23.51	24.53
Zm00001d034886_P001	Maize	nucleus	28.17	20.68
Zm00001d012749_P001	Maize	nucleus	22.74	20.32
Zm00001d012823_P001	Maize	nucleus	28.94	20.14
Zm00001d016674_P001	Maize	nucleus	26.36	20.08
Zm00001d010812_P001	Maize	nucleus	22.74	19.6
Zm00001d038746_P001	Maize	nucleus	22.22	18.34
Zm00001d044259_P001	Maize	plastid	17.57	18.04
Zm00001d048041_P004	Maize	nucleus	20.93	17.92
Zm00001d016520_P001	Maize	nucleus	24.29	17.8
Zm00001d034433_P003	Maize	nucleus	27.39	17.07
CDY43157	Canola	cytosol	0.78	3.33

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	UniProt:A0A1D6FZU3	ProteinID:AQK96789.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388
PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015	PANTHER:PTHR10015:SF187	SMART:SM00415	SUPFAM:SSF46785
UniParc:UPI0008436522	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d011406	EnsemblPlants:Zm00001d011406_P001	EnsemblPlants:Zm00001d011406_T001
SEG:seg	:	:	:	:	:

Description

HSF-transcription factor 25Heat stress transcription factor C-1

Coordinates

chr8:+:149667369..149668532

Molecular Weight (calculated)

41739.9 Da

IEP (calculated)

7.946

GRAVY (calculated)

-0.261

Length

387 amino acids

Sequence
(BLAST)

001: MMDGLHTDLA LGLLGCGGVG VGSSGRGEQL QTAPFVAKTY QMVCDPRTDA LVRWGSENNS FVVVDPAGFS RLLLPCFFKH RNFSSFVRQL NTYVSAPVSE
101: ARLPQPWILR SLTASHAVLY TYLEPWSSGC MQGFRKVHPD RWEFAHESFL RGQTHLLPRI VRRKKRGEGA CTSSGGDAQA QYAAAAAGCC ISMGGEDHRT
201: EGEAEAAVLE EVQRLRQEQT AIGEELAQMS RRLQATERRP DQLMSFLARL AEDPDGVTRH LVEQAAEKKR RRMMQLASQP VRRLPPPPPP PPVLHHPLLA
301: LGGAAAAAAK GLDGGCQWAE QKKPSVVLTA AFDHPAASYC GAQHAVPNLG GGNGGGGING MGLTADETAV ETTTTPFPFC LLGQGFF

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.