Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77420 | Canola | nucleus | 83.03 | 87.26 |
| Bra015050.1-P | Field mustard | nucleus | 81.52 | 87.06 |
| Bra013253.1-P | Field mustard | nucleus | 73.33 | 86.12 |
| CDY39545 | Canola | nucleus | 81.21 | 85.35 |
| CDX93024 | Canola | nucleus | 77.88 | 83.99 |
| CDY50608 | Canola | nucleus | 80.0 | 83.81 |
| KRH39283 | Soybean | nucleus | 49.7 | 51.25 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 50.3 | 50.46 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 19.09 | 47.01 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 22.12 | 45.06 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 30.3 | 43.29 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 20.3 | 43.23 |
| Solyc12g007070.1.1 | Tomato | nucleus | 46.97 | 42.01 |
| PGSC0003DMT400001025 | Potato | nucleus | 46.36 | 41.58 |
| Zm00001d016255_P001 | Maize | nucleus | 32.12 | 41.25 |
| Zm00001d046299_P001 | Maize | nucleus | 33.03 | 40.82 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 32.42 | 40.23 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 27.88 | 40.17 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 27.58 | 40.09 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 34.85 | 39.79 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 32.73 | 39.56 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 32.12 | 39.55 |
| TraesCSU01G127200.1 | Wheat | nucleus | 33.03 | 39.49 |
| HORVU7Hr1G088920.3 | Barley | nucleus | 31.82 | 39.47 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 32.73 | 39.42 |
| TraesCS7D01G367700.1 | Wheat | nucleus | 31.52 | 39.25 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 31.21 | 39.16 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 32.73 | 39.13 |
| EER89919 | Sorghum | nucleus | 33.03 | 39.07 |
| Zm00001d043536_P001 | Maize | nucleus | 29.39 | 38.96 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 32.12 | 38.69 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 27.58 | 38.56 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 32.12 | 38.55 |
| KXG29862 | Sorghum | nucleus | 30.91 | 38.2 |
| TraesCS3D01G280600.1 | Wheat | nucleus | 27.88 | 38.17 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 31.52 | 38.1 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 31.52 | 37.68 |
| TraesCSU01G127300.1 | Wheat | nucleus | 31.21 | 37.45 |
| Os01t0733200-01 | Rice | nucleus | 28.18 | 37.2 |
| KXG33312 | Sorghum | nucleus | 29.09 | 36.92 |
| Os02t0232000-01 | Rice | nucleus | 33.33 | 36.91 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 29.09 | 36.64 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 26.36 | 35.8 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 32.12 | 35.69 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 22.12 | 34.93 |
| GSMUA_Achr10P... | Banana | nucleus | 32.12 | 34.75 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 32.42 | 31.85 |
| HORVU3Hr1G088890.2 | Barley | nucleus | 27.88 | 31.83 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 30.61 | 31.17 |
| TraesCS3D01G227200.1 | Wheat | nucleus | 29.39 | 30.22 |
| AT5G43840.1 | Thale cress | nucleus | 25.76 | 30.14 |
| TraesCS3A01G393100.1 | Wheat | nucleus | 25.76 | 30.14 |
| TraesCS3D01G385900.1 | Wheat | nucleus | 27.88 | 30.07 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 27.58 | 29.93 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 29.39 | 29.85 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 28.18 | 29.62 |
| TraesCS3D01G386000.1 | Wheat | nucleus | 28.18 | 29.62 |
| Zm00001d044168_P001 | Maize | nucleus | 29.39 | 29.31 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 28.79 | 29.23 |
| HORVU3Hr1G055960.1 | Barley | nucleus | 28.79 | 29.05 |
| AT3G51910.1 | Thale cress | nucleus | 23.94 | 29.04 |
| Os01t0625300-01 | Rice | nucleus | 29.7 | 28.91 |
| AT3G63350.1 | Thale cress | nucleus | 24.24 | 28.37 |
| HORVU3Hr1G069590.4 | Barley | nucleus, plastid | 20.0 | 27.85 |
| AT2G26150.1 | Thale cress | nucleus | 28.48 | 27.25 |
| EES01103 | Sorghum | nucleus | 29.39 | 26.58 |
| Zm00001d011406_P001 | Maize | nucleus | 30.61 | 26.1 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 28.18 | 25.62 |
| AT3G22830.1 | Thale cress | nucleus | 28.48 | 23.15 |
| AT5G54070.1 | Thale cress | nucleus | 22.12 | 22.05 |
| AT5G45710.3 | Thale cress | nucleus | 23.03 | 22.03 |
| AT5G03720.1 | Thale cress | nucleus | 26.67 | 21.36 |
| AT3G02990.1 | Thale cress | nucleus | 29.39 | 20.73 |
| AT4G18880.1 | Thale cress | nucleus | 25.15 | 20.7 |
| AT4G17750.1 | Thale cress | nucleus | 30.3 | 20.2 |
| AT1G32330.1 | Thale cress | nucleus | 29.39 | 20.0 |
| AT5G16820.2 | Thale cress | nucleus | 28.79 | 19.75 |
| AT4G13980.1 | Thale cress | nucleus | 24.85 | 17.6 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | EntrezGene:822047 | ProteinID:AEE76915.1 | Symbol:AT-HSFC1 | ArrayExpress:AT3G24520 |
| EnsemblPlantsGene:AT3G24520 | RefSeq:AT3G24520 | TAIR:AT3G24520 | RefSeq:AT3G24520-TAIR-G | EnsemblPlants:AT3G24520.1 | TAIR:AT3G24520.1 |
| EMBL:AY056111 | EMBL:AY072614 | Unigene:At.25607 | ProteinID:BAB02003.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HSF_DNA-bd |
| InterPro:HSF_fam | InterPro:IPR036388 | RefSeq:NP_189095.1 | PFAM:PF00447 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007095 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 |
| PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF187 | UniProt:Q9LV52 | SMART:SM00415 |
| SUPFAM:SSF46785 | UniParc:UPI00000A35F0 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
Coordinates
chr3:+:8941066..8942874
Molecular Weight (calculated)
37716.2 Da
IEP (calculated)
6.016
GRAVY (calculated)
-0.810
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.