Factsheet for Os01t0733200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22616023
nucleus: 22616023

gfp PMID: 22616023 doi

R Schmidt, JH Schippers, A Welker, D Mieulet, E Guiderdoni, B Mueller-Roeber

Institute of Biochemistry and Biology , University of Potsdam , Karl-Liebknecht-Str. 24-25, 14476 Potsdam , Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0588500-01
Os04t0117200-01
Os09t0361100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	Os04t0117200-01	AT1G19980.1	21798944
AT3G24520.1	Os01t0588500-01	AT3G01300.1	21798944
AT3G24520.1	Os09t0361100-01	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G280800.1	Wheat	nucleus	78.0	82.63
TraesCS3D01G280600.1	Wheat	nucleus	78.8	81.74
TraesCS3B01G314600.1	Wheat	nucleus	72.8	80.18
KXG33312	Sorghum	nucleus	82.4	79.23
Zm00001d043536_P001	Maize	nucleus	74.0	74.3
HORVU3Hr1G069590.4	Barley	nucleus, plastid	55.6	58.65
GSMUA_Achr3P15740_001	Banana	nucleus	44.0	39.86
GSMUA_Achr7P24790_001	Banana	nucleus	31.2	37.32
Os02t0232000-01	Rice	nucleus	43.2	36.24
GSMUA_Achr3P31860_001	Banana	nucleus	46.8	36.11
Os01t0625300-01	Rice	nucleus	48.0	35.4
Bra013253.1-P	Field mustard	nucleus	35.6	31.67
CDX93024	Canola	nucleus	38.4	31.37
Bra015050.1-P	Field mustard	nucleus	38.4	31.07
CDY50608	Canola	nucleus	38.4	30.48
CDX77420	Canola	nucleus	38.0	30.25
CDY39545	Canola	nucleus	38.0	30.25
VIT_11s0016g03940.t01	Wine grape	nucleus	39.2	29.79
KRH39283	Soybean	nucleus	38.0	29.69
GSMUA_Achr8P27820_001	Banana	nucleus	42.0	28.93
AT3G24520.1	Thale cress	nucleus	37.2	28.18
CDY43158	Canola	nucleus	34.0	27.78
Os10t0419300-00	Rice	nucleus	39.2	27.37
Os06t0565200-00	Rice	nucleus	35.2	26.59
Os07t0178600-01	Rice	nucleus	36.4	24.46
Solyc12g007070.1.1	Tomato	nucleus	36.0	24.39
PGSC0003DMT400001025	Potato	nucleus	35.6	24.18
Os03t0161900-02	Rice	nucleus	35.6	23.48
Os01t0571300-01	Rice	mitochondrion, nucleus	34.4	21.39
Os03t0854500-01	Rice	nucleus	38.4	18.97
Os03t0224700-01	Rice	nucleus	30.8	18.78
Os05t0530400-01	Rice	nucleus	34.4	18.74
Os01t0749300-02	Rice	nucleus	31.2	17.73
Os02t0527300-01	Rice	nucleus	34.8	17.47
Os02t0496100-01	Rice	nucleus	32.4	17.05
CDY43157	Canola	cytosol	0.8	2.22

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:4324158	EMBL:AK066316	EMBL:AY344493	ProteinID:BAB68070.1
ProteinID:BAB89933.1	ProteinID:BAF06074.1	ProteinID:BAS74204.1	ncoils:Coil	ProteinID:EAZ28980.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388
EnsemblPlantsGene:Os01g0733200	EnsemblPlants:Os01t0733200-01	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015
PANTHER:PTHR10015:SF173	UniProt:Q942D6	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI00000A6A63	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_015633152.1	SEG:seg	:	:	:

Description

HEAT STRESS TRANSCRIPTION FACTOR C1bSimilar to Heat shock transcription factor 29 (Fragment). (Os01t0733200-01)

Coordinates

chr1:+:30582485..30583694

Molecular Weight (calculated)

27220.6 Da

IEP (calculated)

8.950

GRAVY (calculated)

-0.368

Length

250 amino acids

Sequence
(BLAST)

001: MMGGECKVHQ LQAAGDGGPG AVAPFVAKTF HMVSDPSTNA VVRWGGAGNT FLVLDPAAFS DFLLPSYFKH RNFASFVRQL NTYGFRKVDP DRWEFAHESF
101: LRGQAQLLPR IVRKKKKGGA APGCRELCEE GEEVRGTIEA VQRLREEQRG MEEELQAMDQ RLRAAESRPG QMMAFLAKLA DEPGVVLRAM LAKKEELAAA
201: GNNGSDPCKR RRIGADTGRG GVATGGDAAE MAQSRGTVPF PFSVLGQVFY

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.