Factsheet for Bra013253.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012201.1-P
Bra016482.1-P
Bra039129.1-P
Bra040508.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	Bra012201.1-P	AT1G19980.1	21798944
AT3G24520.1	Bra016482.1-P	AT1G19980.1	21798944
AT3G24520.1	Bra039129.1-P	AT3G01300.1	21798944
AT3G24520.1	Bra040508.1-P	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93024	Canola	nucleus	98.93	90.85
CDY50608	Canola	nucleus	96.8	86.35
Bra015050.1-P	Field mustard	nucleus	91.1	82.85
AT3G24520.1	Thale cress	nucleus	86.12	73.33
VIT_11s0016g03940.t01	Wine grape	nucleus	53.02	45.29
HORVU2Hr1G043030.1	Barley	nucleus	24.56	44.52
HORVU7Hr1G034320.1	Barley	nucleus, plastid	20.64	43.28
KRH39283	Soybean	nucleus	49.11	43.12
TraesCS4B01G383200.1	Wheat	nucleus	35.23	42.86
HORVU7Hr1G055320.1	Barley	mitochondrion, nucleus	24.56	42.59
TraesCS3B01G568200.1	Wheat	nucleus	31.67	38.86
TraesCS3B01G314600.1	Wheat	nucleus	31.32	38.77
Zm00001d016255_P001	Maize	nucleus	34.52	37.74
TraesCS4B01G385800.1	Wheat	nucleus	36.3	37.36
TraesCSU01G127200.1	Wheat	nucleus	36.65	37.32
TraesCS3A01G280800.1	Wheat	nucleus	31.32	37.29
Zm00001d046299_P001	Maize	nucleus	35.23	37.08
TraesCS5A01G548700.1	Wheat	nucleus	35.94	36.86
Solyc12g007070.1.1	Tomato	nucleus	48.4	36.86
TraesCS4D01G358900.1	Wheat	nucleus	35.94	36.59
TraesCS4B01G383400.1	Wheat	nucleus	34.88	36.57
TraesCS3D01G280600.1	Wheat	nucleus	31.32	36.51
TraesCS3B01G568300.1	Wheat	nucleus	35.59	36.5
TraesCS7A01G355300.1	Wheat	nucleus	34.52	36.47
GSMUA_Achr4P30990_001	Banana	nucleus	37.37	36.33
TraesCS5A01G550700.1	Wheat	nucleus	35.23	36.26
PGSC0003DMT400001025	Potato	nucleus	47.33	36.14
TraesCS4B01G383300.1	Wheat	nucleus	35.23	36.0
TraesCSU01G127300.1	Wheat	nucleus	35.23	36.0
KXG29862	Sorghum	nucleus	34.16	35.96
Zm00001d043536_P001	Maize	nucleus	31.67	35.74
HORVU7Hr1G088920.3	Barley	nucleus	33.81	35.71
Os01t0733200-01	Rice	nucleus	31.67	35.6
EER89919	Sorghum	nucleus	35.23	35.48
TraesCS7D01G367700.1	Wheat	nucleus	33.45	35.47
TraesCS7B01G272500.1	Wheat	nucleus	32.74	34.98
HORVU7Hr1G119990.1	Barley	nucleus	30.25	34.98
Os02t0232000-01	Rice	nucleus	36.65	34.56
KXG33312	Sorghum	nucleus	31.67	34.23
HORVU4Hr1G090090.4	Barley	nucleus, plastid	35.94	34.01
GSMUA_Achr10P...	Banana	nucleus	36.3	33.44
GSMUA_Achr3P15740_001	Banana	nucleus	32.74	33.33
TraesCS5A01G524000.1	Wheat	nucleus	30.25	32.44
GSMUA_Achr7P24790_001	Banana	nucleus	23.84	32.06
Bra012829.1-P	Field mustard	nucleus	26.33	29.84
HORVU4Hr1G090850.1	Barley	nucleus	35.23	29.46
GSMUA_Achr3P31860_001	Banana	nucleus	33.81	29.32
HORVU3Hr1G088890.2	Barley	nucleus	29.89	29.07
HORVU3Hr1G069590.4	Barley	nucleus, plastid	23.49	27.85
Bra035993.1-P	Field mustard	nucleus	27.76	27.76
Os01t0625300-01	Rice	nucleus	33.1	27.43
TraesCS3A01G393200.1	Wheat	nucleus	30.61	27.39
Zm00001d044168_P001	Maize	nucleus	32.03	27.19
Bra012828.1-P	Field mustard	nucleus	25.98	27.14
TraesCS3D01G385900.1	Wheat	nucleus	29.54	27.12
TraesCS3B01G425200.1	Wheat	nucleus	29.18	26.97
TraesCS3D01G227200.1	Wheat	nucleus	30.61	26.79
TraesCS3A01G229000.1	Wheat	nucleus	30.96	26.77
TraesCS3D01G386000.1	Wheat	nucleus	29.89	26.75
TraesCS3A01G393100.1	Wheat	nucleus	26.69	26.6
TraesCS3B01G255600.1	Wheat	nucleus	30.61	26.46
Bra007739.1-P	Field mustard	nucleus	26.69	26.32
HORVU3Hr1G055960.1	Barley	nucleus	30.61	26.3
Bra000557.1-P	Field mustard	nucleus	30.25	24.43
EES01103	Sorghum	nucleus	31.32	24.11
Bra009515.1-P	Field mustard	nucleus	30.61	23.69
GSMUA_Achr8P27820_001	Banana	nucleus	30.25	23.42
Zm00001d011406_P001	Maize	nucleus	32.03	23.26
Bra040179.1-P	Field mustard	nucleus	33.1	21.53
Bra033913.1-P	Field mustard	nucleus	30.96	21.38
Bra001885.1-P	Field mustard	nucleus	29.54	21.23
Bra017595.1-P	Field mustard	nucleus	25.27	20.88
Bra023800.1-P	Field mustard	nucleus	29.54	20.85
Bra020988.1-P	Field mustard	nucleus	25.27	20.34
Bra021381.1-P	Field mustard	nucleus	32.03	19.82
Bra032023.1-P	Field mustard	nucleus	32.03	19.74
Bra001071.1-P	Field mustard	nucleus	30.96	19.21
Bra023584.1-P	Field mustard	nucleus	29.89	19.0
Bra023258.1-P	Field mustard	nucleus	32.38	18.69
Bra012571.1-P	Field mustard	nucleus	25.62	18.46
Bra008593.1-P	Field mustard	nucleus	30.61	17.81
Bra032752.1-P	Field mustard	nucleus	28.47	16.77
Bra035507.1-P	Field mustard	nucleus	24.2	15.93
Bra013358.1-P	Field mustard	nucleus	25.27	13.73

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EnsemblPlantsGene:Bra013253	EnsemblPlants:Bra013253.1	EnsemblPlants:Bra013253.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
InterPro:IPR036388	UniProt:M4D9U3	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015
PANTHER:PTHR10015:SF187	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002540820	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT3G24520 (E=5e-075) AT-HSFC1, HSFC1 | AT-HSFC1; DNA binding / transcription factor

Coordinates

chrA03:+:19601832..19602677

Molecular Weight (calculated)

32101.0 Da

IEP (calculated)

6.385

GRAVY (calculated)

-0.693

Length

281 amino acids

Sequence
(BLAST)

001: MVNDPSTDWL ITWGPAHNSF VVADPLDFSQ RILPAYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEHFL RGQKHLLKNI ARRKHARGMM DVEDGEIVKE
101: IERLRDEQRE LELEIQRMNQ RIEATEKRPE QMMAFLYKVV DDPDLLPRMM LEKERLVSDK KKRRVTVKSE EGAEEEERVF GVVSPSPSPP ENSIGWVVPM
201: QRQGTFGSYY NETGMVANSM RSTSSKSSSL TSTLSLPESV NGGCGSVQGE TRDKEAATFG GVVESNPQTP PYPFSLFRGG F

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.