Factsheet for Bra021381.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58547	Canola	nucleus	99.12	99.12
Bra001071.1-P	Field mustard	nucleus	79.96	80.13
Bra032023.1-P	Field mustard	nucleus	79.3	78.95
AT3G02990.1	Thale cress	nucleus	81.06	78.63
Bra023584.1-P	Field mustard	nucleus	61.45	63.12
Bra008593.1-P	Field mustard	nucleus	55.73	52.38
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	53.96	47.85
GSMUA_Achr4P04500_001	Banana	nucleus	45.37	46.92
KRH77766	Soybean	nucleus	46.92	45.91
KRH27709	Soybean	nucleus	45.81	44.83
PGSC0003DMT400008199	Potato	nucleus	47.58	43.9
Bra040179.1-P	Field mustard	nucleus	41.19	43.29
Os03t0854500-01	Rice	nucleus	48.02	43.08
GSMUA_Achr3P27600_001	Banana	nucleus	40.31	42.96
Solyc03g097120.2.1	Tomato	nucleus	46.26	42.77
GSMUA_Achr4P17040_001	Banana	nucleus	44.27	41.27
TraesCS5D01G553300.1	Wheat	nucleus	47.14	41.0
TraesCS4A01G322300.1	Wheat	nucleus	46.92	40.88
Bra012829.1-P	Field mustard	nucleus	22.25	40.73
TraesCS5B01G556200.1	Wheat	nucleus	47.14	40.45
EER93074	Sorghum	nucleus	46.92	40.42
Zm00001d034886_P001	Maize	nucleus	46.48	40.04
Bra023258.1-P	Field mustard	nucleus	42.51	39.63
PGSC0003DMT400069550	Potato	nucleus	40.97	38.67
Bra012828.1-P	Field mustard	nucleus	22.91	38.66
Solyc06g072750.2.1	Tomato	nucleus	40.75	38.38
Bra035507.1-P	Field mustard	nucleus	35.9	38.17
Bra007739.1-P	Field mustard	nucleus	23.57	37.54
HORVU5Hr1G123770.1	Barley	nucleus	46.92	37.11
Bra000557.1-P	Field mustard	nucleus	28.41	37.07
Bra035993.1-P	Field mustard	nucleus	22.91	37.01
Zm00001d012823_P001	Maize	nucleus	45.15	36.87
Bra001885.1-P	Field mustard	nucleus	29.3	34.02
Bra023800.1-P	Field mustard	nucleus	29.52	33.67
Bra033913.1-P	Field mustard	nucleus	29.52	32.92
Bra013253.1-P	Field mustard	nucleus	19.82	32.03
Bra015050.1-P	Field mustard	nucleus	21.59	31.72
Bra017595.1-P	Field mustard	nucleus	23.57	31.47
Bra020988.1-P	Field mustard	nucleus	24.01	31.23
Bra012571.1-P	Field mustard	nucleus	25.99	30.26
Bra009515.1-P	Field mustard	nucleus	24.01	30.03
Bra032752.1-P	Field mustard	nucleus	26.87	25.58
Bra013358.1-P	Field mustard	nucleus	25.11	22.05

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	EnsemblPlantsGene:Bra021381	EnsemblPlants:Bra021381.1	EnsemblPlants:Bra021381.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	InterPro:IPR036388	UniProt:M4DXY5	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002544CCE	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

AT5G16820 (E=1e-123) HSF3, HSFA1B, ATHSFA1B | HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor

Coordinates

chrA01:+:25469096..25471456

Molecular Weight (calculated)

50252.7 Da

IEP (calculated)

4.965

GRAVY (calculated)

-0.643

Length

454 amino acids

Sequence
(BLAST)

001: MGSISESAPT ANSSTTVVMS SIPPFLSKTY DMVDDPSTDE VVSWSSGSNS FVVWNVPEFS KQFLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF
101: LKGQKQLLKS IIRRKPTQVQ PPQQPQVQHS SVGACVEVGK FGLEEEVERL QRDKNVLMQE LVRLRQQQQV TEHHLQHVGQ KVHVMEQRQQ QMMSFLAKAV
201: QSPGFLNQFS QQSNNEGNQH ISESNKKRRL PVEDQKNSGG SSQGLNGLSR QIVRYQSSMN ESANSMLQQI HNMGNTHTNN HGSFLLGDVP NPNLSDNGSS
301: SNGPSGVVAF TDVSSNTTNQ VLETNLPYPQ PQADLLAPKQ GAEGGSGSPS PDLVGGERDT GECLDPIMAV LDGSMMLETN ELLPGVQDSL WEQFFGESSG
401: IGDSDELVSG SVDNELIMEQ LELQPNLRNV LSNNQQMNHL TEQMGLLTSD ALRK

Best Arabidopsis Sequence Match ( AT3G02990.1 )
(BLAST)

001: MGTVCESVAT AKSSTAVMSS IPPFLSKTYD MVDDPLTDDV VSWSSGNNSF VVWNVPEFAK QFLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL
101: RGQKQILKSI VRRKPAQVQP PQQPQVQHSS VGACVEVGKF GLEEEVERLQ RDKNVLMQEL VRLRQQQQVT EHHLQNVGQK VHVMEQRQQQ MMSFLAKAVQ
201: SPGFLNQFSQ QSNEANQHIS ESNKKRRLPV EDQMNSGSHG VNGLSRQIVR YQSSMNDATN TMLQQIQQMS NAPSHESLSS NNGSFLLGDV PNSNISDNGS
301: SSNGSPEVTL ADVSSIPAGF YPAMKYHEPC ETNQVMETNL PFSQGDLLPP TQGAAASGSS SSDLVGCETD NGECLDPIMA VLDGALELEA DTLNELLPEV
401: QDSFWEQFIG ESPVIGETDE LISGSVENEL ILEQLELQST LSNVWSKNQQ MNHLTEQMGL LTSDALRK

Arabidopsis Description

HSFA1EHeat stress transcription factor A-1e [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.