Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032023.1-P | Field mustard | nucleus | 79.49 | 81.58 |
| CDY58547 | Canola | nucleus | 78.85 | 81.28 |
| Bra021381.1-P | Field mustard | nucleus | 78.63 | 81.06 |
| CDX74228 | Canola | nucleus | 78.21 | 80.44 |
| Bra001071.1-P | Field mustard | nucleus | 77.14 | 79.69 |
| CDY28731 | Canola | nucleus | 74.15 | 79.59 |
| CDX92026 | Canola | nucleus | 72.44 | 75.67 |
| AT5G16820.2 | Thale cress | nucleus | 65.6 | 63.83 |
| VIT_16s0039g01840.t01 | Wine grape | nucleus, plastid | 53.42 | 48.83 |
| KRH77766 | Soybean | nucleus | 47.65 | 48.06 |
| GSMUA_Achr4P04500_001 | Banana | nucleus | 44.44 | 47.38 |
| KRH27709 | Soybean | nucleus | 46.58 | 46.98 |
| PGSC0003DMT400008199 | Potato | nucleus | 47.65 | 45.33 |
| Solyc03g097120.2.1 | Tomato | nucleus | 46.15 | 43.99 |
| Os03t0854500-01 | Rice | nucleus | 46.37 | 42.89 |
| GSMUA_Achr3P27600_001 | Banana | nucleus | 38.89 | 42.72 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 44.44 | 42.71 |
| TraesCS5D01G553300.1 | Wheat | nucleus | 47.01 | 42.15 |
| AT1G32330.1 | Thale cress | nucleus | 43.59 | 42.06 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 46.79 | 42.03 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 47.22 | 41.78 |
| EER93074 | Sorghum | nucleus | 46.15 | 40.99 |
| AT3G51910.1 | Thale cress | nucleus | 23.72 | 40.81 |
| Zm00001d034886_P001 | Maize | nucleus | 45.73 | 40.61 |
| PGSC0003DMT400069550 | Potato | nucleus | 40.6 | 39.5 |
| Solyc06g072750.2.1 | Tomato | nucleus | 39.96 | 38.8 |
| AT4G17750.1 | Thale cress | nucleus | 41.03 | 38.79 |
| HORVU5Hr1G123770.1 | Barley | nucleus | 46.15 | 37.63 |
| Zm00001d012823_P001 | Maize | nucleus | 44.44 | 37.41 |
| AT2G26150.1 | Thale cress | nucleus | 27.35 | 37.1 |
| AT3G63350.1 | Thale cress | nucleus | 21.58 | 35.82 |
| AT5G43840.1 | Thale cress | nucleus | 20.73 | 34.4 |
| AT3G22830.1 | Thale cress | nucleus | 29.27 | 33.74 |
| AT4G18880.1 | Thale cress | nucleus | 26.71 | 31.17 |
| AT5G45710.3 | Thale cress | nucleus | 22.86 | 31.01 |
| AT3G24520.1 | Thale cress | nucleus | 20.73 | 29.39 |
| AT5G54070.1 | Thale cress | nucleus | 20.09 | 28.4 |
| AT5G03720.1 | Thale cress | nucleus | 22.44 | 25.49 |
| AT4G13980.1 | Thale cress | nucleus | 24.57 | 24.68 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | MapMan:26.4.2.1 | EntrezGene:821162 | UniProt:A0A178VCY3 | ProteinID:AAF26960.1 |
| ProteinID:AEE73888.1 | EMBL:AJ251865 | ArrayExpress:AT3G02990 | EnsemblPlantsGene:AT3G02990 | RefSeq:AT3G02990 | TAIR:AT3G02990 |
| RefSeq:AT3G02990-TAIR-G | EnsemblPlants:AT3G02990.1 | TAIR:AT3G02990.1 | Symbol:ATHSFA1E | Unigene:At.5971 | EMBL:BT026365 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | RefSeq:NP_186949.1 | ProteinID:OAP04150.1 |
| PFAM:PF00447 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 |
| PANTHER:PTHR10015:SF162 | UniProt:Q9SCW5 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI000012CCE6 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
HSFA1EHeat stress transcription factor A-1e [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW5]
Coordinates
chr3:+:673428..676428
Molecular Weight (calculated)
51965.8 Da
IEP (calculated)
4.558
GRAVY (calculated)
-0.523
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTVCESVAT AKSSTAVMSS IPPFLSKTYD MVDDPLTDDV VSWSSGNNSF VVWNVPEFAK QFLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL
101: RGQKQILKSI VRRKPAQVQP PQQPQVQHSS VGACVEVGKF GLEEEVERLQ RDKNVLMQEL VRLRQQQQVT EHHLQNVGQK VHVMEQRQQQ MMSFLAKAVQ
201: SPGFLNQFSQ QSNEANQHIS ESNKKRRLPV EDQMNSGSHG VNGLSRQIVR YQSSMNDATN TMLQQIQQMS NAPSHESLSS NNGSFLLGDV PNSNISDNGS
301: SSNGSPEVTL ADVSSIPAGF YPAMKYHEPC ETNQVMETNL PFSQGDLLPP TQGAAASGSS SSDLVGCETD NGECLDPIMA VLDGALELEA DTLNELLPEV
401: QDSFWEQFIG ESPVIGETDE LISGSVENEL ILEQLELQST LSNVWSKNQQ MNHLTEQMGL LTSDALRK
101: RGQKQILKSI VRRKPAQVQP PQQPQVQHSS VGACVEVGKF GLEEEVERLQ RDKNVLMQEL VRLRQQQQVT EHHLQNVGQK VHVMEQRQQQ MMSFLAKAVQ
201: SPGFLNQFSQ QSNEANQHIS ESNKKRRLPV EDQMNSGSHG VNGLSRQIVR YQSSMNDATN TMLQQIQQMS NAPSHESLSS NNGSFLLGDV PNSNISDNGS
301: SSNGSPEVTL ADVSSIPAGF YPAMKYHEPC ETNQVMETNL PFSQGDLLPP TQGAAASGSS SSDLVGCETD NGECLDPIMA VLDGALELEA DTLNELLPEV
401: QDSFWEQFIG ESPVIGETDE LISGSVENEL ILEQLELQST LSNVWSKNQQ MNHLTEQMGL LTSDALRK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.