CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74228	Canola	nucleus	86.83	85.49
CDY43158	Canola	nucleus	57.59	84.31
CDY58547	Canola	nucleus	76.12	75.11
AT3G02990.1	Thale cress	nucleus	75.67	72.44
CDY28731	Canola	nucleus	69.87	71.79
CDX85486	Canola	nucleus	58.48	59.28
CDY38085	Canola	nucleus	57.37	58.54
CDY16977	Canola	nucleus	50.45	51.25
CDX69418	Canola	nucleus	54.24	49.9
CDY43157	Canola	cytosol	9.15	45.56
KRH77766	Soybean	nucleus	47.1	45.47
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	51.12	44.73
GSMUA_Achr4P04500_001	Banana	nucleus	43.08	43.96
KRH27709	Soybean	nucleus	45.31	43.75
PGSC0003DMT400008199	Potato	nucleus	46.88	42.68
Solyc03g097120.2.1	Tomato	nucleus	46.21	42.16
CDX78797	Canola	nucleus	39.73	41.4
CDY60785	Canola	nucleus	40.18	41.19
Os03t0854500-01	Rice	nucleus	46.21	40.91
GSMUA_Achr4P17040_001	Banana	nucleus	43.53	40.04
GSMUA_Achr3P27600_001	Banana	nucleus	37.95	39.91
CDY14893	Canola	nucleus	23.21	39.69
CDY29054	Canola	nucleus	23.44	39.62
CDX90626	Canola	nucleus	23.66	39.41
TraesCS4A01G322300.1	Wheat	nucleus	45.76	39.35
TraesCS5D01G553300.1	Wheat	nucleus	45.76	39.27
CDX95313	Canola	nucleus	23.44	39.18
PGSC0003DMT400069550	Potato	nucleus	41.96	39.09
Solyc06g072750.2.1	Tomato	nucleus	41.96	39.0
TraesCS5B01G556200.1	Wheat	nucleus	45.98	38.94
EER93074	Sorghum	nucleus	45.54	38.71
Zm00001d034886_P001	Maize	nucleus	45.54	38.71
CDX93842	Canola	nucleus	40.85	37.58
CDY01288	Canola	nucleus	40.62	36.99
CDX76693	Canola	nucleus	23.44	36.84
CDY11470	Canola	nucleus	23.44	36.84
CDY21503	Canola	nucleus	28.57	36.68
CDX90627	Canola	nucleus	23.21	36.24
Zm00001d012823_P001	Maize	nucleus	44.42	35.79
HORVU5Hr1G123770.1	Barley	nucleus	45.31	35.37
CDX94887	Canola	nucleus	20.54	34.07
CDY13041	Canola	nucleus	23.21	33.88
CDX83217	Canola	nucleus	28.12	33.78
CDY34229	Canola	nucleus	28.57	33.77
CDY44649	Canola	nucleus	35.04	33.05
CDY10674	Canola	nucleus	28.57	32.9
CDY46606	Canola	nucleus	27.9	32.64
CDY46607	Canola	nucleus	26.56	32.08
CDY09259	Canola	nucleus	25.89	32.04
CDY10311	Canola	nucleus	27.68	31.96
CDY23108	Canola	nucleus	24.11	31.76
CDX76506	Canola	nucleus	25.67	31.42
CDX94884	Canola	nucleus	19.87	31.01
CDX92958	Canola	nucleus	23.66	30.81
CDY01562	Canola	nucleus	26.79	30.53
CDY69818	Canola	nucleus	26.56	30.51
CDX93024	Canola	nucleus	20.76	30.39
CDX99415	Canola	nucleus	25.89	30.21
CDX77420	Canola	nucleus	20.98	29.94
CDY50608	Canola	nucleus	20.98	29.84
CDX70290	Canola	nucleus	24.11	29.75
CDY39545	Canola	nucleus	20.76	29.62
CDY10361	Canola	nucleus	24.78	27.68
CDY12723	Canola	nucleus	27.46	25.89
CDY01180	Canola	nucleus	26.34	24.74
CDX84097	Canola	nucleus	13.17	21.93
CDX78902	Canola	nucleus	25.22	21.86

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	GO:A0A078DRZ4	EnsemblPlants:CDX92026	ProteinID:CDX92026
ProteinID:CDX92026.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00153686001	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0004EF225B
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaC03g33280D

Coordinates

chrLK031870:+:1316816..1319131

Molecular Weight (calculated)

49479.1 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.493

Length

448 amino acids

Sequence
(BLAST)

001: MRSICESVPA ANSSSASTTV VSSIPPFLSK TYDMVDDPLT DEVVSWSSGN NSFVVWNVPE FAKQFLPKYF KHNNFSSFVR QLNTYGFRKI DPERWEFANE
101: GFVRGQKHLL KSINRRKPSQ VQPQKQPQVQ HSSVGACVEV GKFGLEEEVE RLQRDKNVLM QELVRLRQQQ QGTEHHLQNV GQKVHVMEQR QQQMMSFLAK
201: AVQSPGFLNQ FSQQSSEGNQ HISESNKKRR LPVENQKGSG SHGVNGLSRQ IVRYQSSMNE SANSVLQQIQ SMSSSRGCHE PLSNNHGSFL LGDVPNLSAN
301: GSSSNGASGV AFSDVSSNAA MKHHDPYAQA DLLAPRQGAV VASGSSSSDL VGCETDNGEC LDPMMAVLDE SMMLGSDGAI NELLPGAGDS LWEQFFGESP
401: GIGITDELVS GCRRWGLSFV ELQQQKYNDQ KEVVVYLCIK LSFLSMCD

Best Arabidopsis Sequence Match ( AT3G02990.1 )
(BLAST)

001: MGTVCESVAT AKSSTAVMSS IPPFLSKTYD MVDDPLTDDV VSWSSGNNSF VVWNVPEFAK QFLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL
101: RGQKQILKSI VRRKPAQVQP PQQPQVQHSS VGACVEVGKF GLEEEVERLQ RDKNVLMQEL VRLRQQQQVT EHHLQNVGQK VHVMEQRQQQ MMSFLAKAVQ
201: SPGFLNQFSQ QSNEANQHIS ESNKKRRLPV EDQMNSGSHG VNGLSRQIVR YQSSMNDATN TMLQQIQQMS NAPSHESLSS NNGSFLLGDV PNSNISDNGS
301: SSNGSPEVTL ADVSSIPAGF YPAMKYHEPC ETNQVMETNL PFSQGDLLPP TQGAAASGSS SSDLVGCETD NGECLDPIMA VLDGALELEA DTLNELLPEV
401: QDSFWEQFIG ESPVIGETDE LISGSVENEL ILEQLELQST LSNVWSKNQQ MNHLTEQMGL LTSDALRK

Arabidopsis Description

HSFA1EHeat stress transcription factor A-1e [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.