CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023584.1-P	Field mustard	nucleus	97.51	97.51
CDY38085	Canola	nucleus	89.37	89.98
AT5G16820.2	Thale cress	nucleus	78.05	71.73
CDY43158	Canola	nucleus	47.51	68.63
CDY16977	Canola	nucleus	68.33	68.48
CDX69418	Canola	nucleus	73.08	66.32
CDY58547	Canola	nucleus	63.35	61.67
CDX74228	Canola	nucleus	62.67	60.88
CDY28731	Canola	nucleus	58.14	58.95
CDX92026	Canola	nucleus	59.28	58.48
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	55.66	48.05
GSMUA_Achr4P04500_001	Banana	nucleus	47.51	47.84
CDY43157	Canola	cytosol	9.5	46.67
KRH77766	Soybean	nucleus	48.64	46.34
KRH27709	Soybean	nucleus	46.38	44.18
PGSC0003DMT400008199	Potato	nucleus	49.09	44.11
GSMUA_Achr4P17040_001	Banana	nucleus	47.96	43.53
Os03t0854500-01	Rice	nucleus	49.77	43.48
Solyc03g097120.2.1	Tomato	nucleus	47.96	43.18
GSMUA_Achr3P27600_001	Banana	nucleus	41.18	42.72
CDX78797	Canola	nucleus	41.18	42.33
CDY60785	Canola	nucleus	41.18	41.65
TraesCS5D01G553300.1	Wheat	nucleus	48.87	41.38
PGSC0003DMT400069550	Potato	nucleus	44.8	41.16
TraesCS4A01G322300.1	Wheat	nucleus	48.42	41.07
Solyc06g072750.2.1	Tomato	nucleus	44.57	40.87
TraesCS5B01G556200.1	Wheat	nucleus	48.87	40.83
EER93074	Sorghum	nucleus	48.42	40.61
Zm00001d034886_P001	Maize	nucleus	47.29	39.66
CDX95313	Canola	nucleus	23.98	39.55
CDY14893	Canola	nucleus	23.3	39.31
CDX93842	Canola	nucleus	42.76	38.81
CDX90626	Canola	nucleus	23.53	38.66
CDY29054	Canola	nucleus	23.08	38.49
CDY01288	Canola	nucleus	42.53	38.21
Zm00001d012823_P001	Maize	nucleus	47.06	37.41
HORVU5Hr1G123770.1	Barley	nucleus	48.42	37.28
CDY21503	Canola	nucleus	29.19	36.96
CDX90627	Canola	nucleus	23.53	36.24
CDX76693	Canola	nucleus	23.3	36.14
CDY11470	Canola	nucleus	23.08	35.79
CDY34229	Canola	nucleus	30.54	35.62
CDX94887	Canola	nucleus	21.72	35.56
CDY13041	Canola	nucleus	24.43	35.18
CDY10674	Canola	nucleus	30.77	34.96
CDY46606	Canola	nucleus	29.64	34.2
CDX83217	Canola	nucleus	28.73	34.05
CDY46607	Canola	nucleus	28.51	33.96
CDY23108	Canola	nucleus	26.02	33.82
CDY10311	Canola	nucleus	29.64	33.76
CDY09259	Canola	nucleus	26.92	32.87
CDX94884	Canola	nucleus	21.04	32.4
CDX92958	Canola	nucleus	25.11	32.27
CDX76506	Canola	nucleus	26.7	32.24
CDY44649	Canola	nucleus	33.71	31.37
CDX99415	Canola	nucleus	27.15	31.25
CDX70290	Canola	nucleus	25.57	31.13
CDY69818	Canola	nucleus	27.38	31.03
CDY01562	Canola	nucleus	27.38	30.79
CDX93024	Canola	nucleus	21.04	30.39
CDY39545	Canola	nucleus	21.27	29.94
CDX77420	Canola	nucleus	21.27	29.94
CDY50608	Canola	nucleus	21.04	29.52
CDY10361	Canola	nucleus	26.24	28.93
CDY12723	Canola	nucleus	26.24	24.42
CDY01180	Canola	nucleus	25.11	23.27
CDX78902	Canola	nucleus	26.92	23.02
CDX84097	Canola	nucleus	11.54	18.96

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	GO:A0A078D885	EnsemblPlants:CDX85486	ProteinID:CDX85486
ProteinID:CDX85486.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00143186001	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0004EDEB82
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaA02g03270D

Coordinates

chrLK031842:-:318827..320503

Molecular Weight (calculated)

49038.2 Da

IEP (calculated)

4.555

GRAVY (calculated)

-0.652

Length

442 amino acids

Sequence
(BLAST)

001: MESVQSAPSA NSNSPSIPPP VSSVPPFLSK TYDMVDDPST NDVVSWSSGN NSFVVWNVPE FSKVLLPKHF KHNNFSSFVR QLNTYGFRKV DPDQWEFANE
101: GFLRGQKQLL KGIVRRKPQN QQQTQVQNSS VSACVEVGKF GIEEEVERLK RDKNVLMQEL VRLRQQQQAT EHQLQNVGQK VQVMEQRQQQ TMSFLAKAVQ
201: SPGFLNQLVQ QNNDGNKHIQ GSNKKRRLPG DEEESCGELN RQIVKYQPSI NEAAQTMLRQ VLNRSSSPVS NNPESFLLSD APSSNSPNSA HSAMNQVHEA
301: GLVDHLQAGP SPSQGGVAAA ASWSPESELV GLETGDGVCF DPIMAALGGS LEIESDEVSP VGEGEMTELQ NEAPKLPGVQ DSFWEQFFAD ETAVIGEGDV
401: IISEAVENCE MVMEQEPKEW KQQEMNHLTE QMELLSSEAQ RK

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.