Factsheet for GSMUA_Achr4P17040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P21380_001
GSMUA_Achr1P26830_001
GSMUA_Achr2P07660_001
GSMUA_Achr3P18430_001
GSMUA_Achr5P08990_001
GSMUA_Achr6P16020_001
GSMUA_Achr6P23210_001
GSMUA_Achr6P23680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	GSMUA_Achr1P26830_001	AT1G55520.1	9801140
AT4G17750.1	GSMUA_Achr5P08990_001	AT1G55520.1	9801140
AT4G17750.1	GSMUA_Achr6P23210_001	AT1G55520.1	9801140
AT4G17750.1	GSMUA_Achr10P...	AT2G41140.1	18466301
AT4G17750.1	GSMUA_Achr3P18430_001	AT2G41140.1	18466301
AT4G17750.1	GSMUA_Achr6P16020_001	AT2G41140.1	18466301
AT4G17750.1	GSMUA_Achr6P23680_001	AT2G41140.1	18466301
AT4G17750.1	GSMUA_Achr1P26830_001	AT3G13445.1	9801140
AT4G17750.1	GSMUA_Achr5P08990_001	AT3G13445.1	9801140
AT4G17750.1	GSMUA_Achr6P23210_001	AT3G13445.1	9801140
AT4G17750.1	GSMUA_Achr1P21380_001	AT3G19100.1	18466301
AT4G17750.1	GSMUA_Achr2P07660_001	AT3G19100.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06020_001	Banana	nucleus	20.33	65.13
GSMUA_Achr4P04500_001	Banana	nucleus	53.18	59.0
GSMUA_Achr3P27600_001	Banana	nucleus	46.82	53.52
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	53.59	50.98
VIT_02s0012g01810.t01	Wine grape	nucleus	50.31	49.4
KRH74387	Soybean	nucleus	49.49	49.18
KRH39566	Soybean	nucleus	49.69	48.4
CDX85486	Canola	nucleus	43.53	47.96
KRH07474	Soybean	nucleus	49.9	47.65
Bra023584.1-P	Field mustard	nucleus	42.92	47.29
CDY38085	Canola	nucleus	42.51	47.15
AT5G16820.2	Thale cress	nucleus	46.41	46.99
KRH77766	Soybean	nucleus	44.35	46.55
KRH27709	Soybean	nucleus	43.74	45.91
PGSC0003DMT400008199	Potato	nucleus	46.2	45.73
Solyc03g097120.2.1	Tomato	nucleus	46.0	45.62
Bra032023.1-P	Field mustard	nucleus	42.51	45.39
GSMUA_Achr8P27750_001	Banana	nucleus	20.53	45.25
GSMUA_Achr5P03000_001	Banana	nucleus	30.8	44.91
GSMUA_Achr8P20520_001	Banana	nucleus	26.69	44.83
GSMUA_Achr2P16660_001	Banana	nucleus	25.05	44.69
CDX78797	Canola	nucleus	39.43	44.65
CDX74228	Canola	nucleus	41.68	44.62
Bra001071.1-P	Field mustard	nucleus	41.48	44.59
AT3G02990.1	Thale cress	nucleus	42.71	44.44
Bra021381.1-P	Field mustard	nucleus	41.27	44.27
Bra040179.1-P	Field mustard	nucleus	39.22	44.21
CDY58547	Canola	nucleus	41.07	44.05
CDY28731	Canola	nucleus	39.22	43.81
CDY60785	Canola	nucleus	39.22	43.71
CDY16977	Canola	nucleus	39.43	43.54
CDX92026	Canola	nucleus	40.04	43.53
GSMUA_Achr6P24430_001	Banana	nucleus	27.52	43.51
AT1G32330.1	Thale cress	nucleus	43.33	43.51
Solyc08g076590.2.1	Tomato	nucleus	43.74	43.47
GSMUA_Achr6P00960_001	Banana	nucleus	27.72	43.13
Bra008593.1-P	Field mustard	nucleus	42.71	43.06
CDX69418	Canola	nucleus	42.71	42.71
PGSC0003DMT400046000	Potato	nucleus	44.15	42.32
PGSC0003DMT400038381	Potato	nucleus	42.92	41.97
Bra023258.1-P	Field mustard	nucleus	41.68	41.68
CDX93842	Canola	nucleus	41.68	41.68
Solyc06g072750.2.1	Tomato	nucleus	41.07	41.49
PGSC0003DMT400069550	Potato	nucleus	40.86	41.37
AT4G17750.1	Thale cress	nucleus	41.89	41.21
Solyc08g005170.2.1	Tomato	nucleus	44.56	41.18
CDY01288	Canola	nucleus	41.48	41.06
GSMUA_Achr1P27200_001	Banana	nucleus	27.72	40.54
Bra035507.1-P	Field mustard	nucleus	34.29	39.11
GSMUA_Achr2P21640_001	Banana	nucleus	26.49	38.86
GSMUA_Achr7P24790_001	Banana	nucleus	15.61	36.36
CDY44649	Canola	nucleus	35.11	36.0
GSMUA_Achr3P15740_001	Banana	nucleus	19.1	33.7
GSMUA_Achr4P30990_001	Banana	nucleus	19.92	33.56
GSMUA_Achr3P31860_001	Banana	nucleus	21.97	33.02
GSMUA_Achr9P01640_001	Banana	nucleus	25.67	32.81
GSMUA_Achr3P15640_001	Banana	nucleus	30.18	32.45
GSMUA_Achr6P27750_001	Banana	nucleus	26.08	32.32
GSMUA_Achr8P28330_001	Banana	nucleus	21.36	31.8
GSMUA_Achr6P31750_001	Banana	nucleus	29.98	30.04
GSMUA_Achr8P27820_001	Banana	nucleus	20.33	27.27
GSMUA_Achr10P...	Banana	nucleus	17.04	27.21
CDX84097	Canola	nucleus	14.17	25.65
GSMUA_Achr5P15900_001	Banana	nucleus	27.31	24.31

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr4G17040_001	EnsemblPlants:GSMUA_Achr4P17040_001
EnsemblPlants:GSMUA_Achr4T17040_001	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:M0SPL8	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785
TMHMM:TMhelix	UniParc:UPI000294E48D	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

Heat stress transcription factor A-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G17040_001]

Coordinates

chr4:+:15760889..15769596

Molecular Weight (calculated)

54620.2 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.528

Length

487 amino acids

Sequence
(BLAST)

001: MEHSCGSGGV DGGQGATTAK KERASVPNPG LNGNVPPPFL SKTYDMVDDP ATDAIVSWGP ENNSFVVWNP PEFARDLLPK YFKHNNFSSF VRQLNTYGFR
101: KVDPDRWEFA NEGFLRGQKH LLKTINRRKP SHVGKFGLEE EVERLKRDKN VLMQELIRLR QQQQASDHQL QTLMKSLKGM EQRQQQMMSF LAKAMRSPGF
201: FTQLVEQNDR SRRITGVNKK RRLPKEGSSD GEKPEGQIVK YQPLINEAAK AMLRQILKMN TSTMLESVGT SDNLFIENFH SPSETFDSTS SLNSAVTLSD
301: VPSNSGVSFM PASSGFSAIC SASAESSDHI PEFPELLEIV ANDDAINIPV ENLVVPEPEN LYVNPNVSAL QEAVPIETDD HSADCNVNFH NTDEKLPGIV
401: DAFWEQFLMA SPLSGDTEEV ESTLQEAKEY QQSNVDSEWN STHHMNHLTE QMGLLSSDPK AGNFSMKYHL YIWFCIIAGS NLFFFLL

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.