CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95088
KRH00416
KRH01631
KRH08285
KRH33063
KRH40768
KRH50248
KRH65451
KRH70484
KRH71170
KRH71707

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	KRH00416	AT1G55520.1	9801140
AT4G17750.1	KRH08285	AT1G55520.1	9801140
AT4G17750.1	KRH40768	AT1G55520.1	9801140
AT4G17750.1	KRH65451	AT1G55520.1	9801140
AT4G17750.1	KRG95088	AT2G41140.1	18466301
AT4G17750.1	KRH33063	AT2G41140.1	18466301
AT4G17750.1	KRH71707	AT2G41140.1	18466301
AT4G17750.1	KRH01631	AT3G12580.1	11807141
AT4G17750.1	KRH70484	AT3G12580.1	11807141
AT4G17750.1	KRH00416	AT3G13445.1	9801140
AT4G17750.1	KRH08285	AT3G13445.1	9801140
AT4G17750.1	KRH40768	AT3G13445.1	9801140
AT4G17750.1	KRH65451	AT3G13445.1	9801140
AT4G17750.1	KRH50248	AT3G19100.1	18466301
AT4G17750.1	KRH71170	AT3G19100.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39566	Soybean	nucleus	94.69	92.8
KRH07474	Soybean	nucleus	74.9	71.96
VIT_02s0012g01810.t01	Wine grape	nucleus	64.69	63.91
PGSC0003DMT400046000	Potato	nucleus	56.73	54.72
GSMUA_Achr4P04500_001	Banana	nucleus	48.57	54.21
AT1G32330.1	Thale cress	nucleus	52.65	53.2
Solyc08g005170.2.1	Tomato	nucleus	56.33	52.37
GSMUA_Achr3P27600_001	Banana	nucleus	45.31	52.11
CDX78797	Canola	nucleus	45.51	51.86
Bra040179.1-P	Field mustard	nucleus	45.31	51.39
CDY60785	Canola	nucleus	45.51	51.03
CDX93842	Canola	nucleus	50.2	50.51
Bra023258.1-P	Field mustard	nucleus	50.2	50.51
CDY01288	Canola	nucleus	49.8	49.59
GSMUA_Achr4P17040_001	Banana	nucleus	49.18	49.49
Solyc08g076590.2.1	Tomato	nucleus	48.98	48.98
Os03t0854500-01	Rice	nucleus	50.41	48.81
TraesCS4A01G322300.1	Wheat	nucleus	51.84	48.75
TraesCS5D01G553300.1	Wheat	nucleus	51.84	48.66
PGSC0003DMT400038381	Potato	nucleus	49.39	48.59
KRH77766	Soybean	nucleus	45.71	48.28
AT4G17750.1	Thale cress	nucleus	48.57	48.08
TraesCS5B01G556200.1	Wheat	nucleus	51.63	47.83
KRH27709	Soybean	nucleus	44.49	46.98
EER93074	Sorghum	nucleus	50.41	46.87
Zm00001d034886_P001	Maize	nucleus	49.18	45.73
Bra035507.1-P	Field mustard	nucleus	39.39	45.2
HORVU5Hr1G123770.1	Barley	nucleus	51.63	44.08
KRG91367	Soybean	nucleus	32.24	43.17
Zm00001d012823_P001	Maize	nucleus	47.96	42.27
CDY44649	Canola	nucleus	40.41	41.68
KRH31657	Soybean	nucleus	28.57	41.54
KRG95588	Soybean	nucleus	31.02	41.08
KRH15573	Soybean	nucleus	30.0	40.38
KRH05436	Soybean	nucleus	28.78	39.72
KRH32059	Soybean	nucleus	27.35	39.3
KRH67266	Soybean	nucleus	30.82	39.12
KRH35452	Soybean	nucleus	29.18	39.07
KRH61515	Soybean	nucleus	28.78	37.9
CDX84097	Canola	nucleus	18.78	34.2
KRH39283	Soybean	nucleus	22.24	34.06
KRH59030	Soybean	nucleus	25.51	31.09
KRH11063	Soybean	nucleus	24.69	30.87
KRH42919	Soybean	nucleus	24.9	30.35
KRH21206	Soybean	nucleus	24.08	30.1
KRH02689	Soybean	nucleus	23.88	28.96
KRH32651	Soybean	nucleus	26.94	28.7
KRH19208	Soybean	nucleus	23.88	28.68
KRH20029	Soybean	nucleus	26.53	28.63
KRH67848	Soybean	nucleus	24.29	28.13
KRH58845	Soybean	nucleus	27.14	27.77
KRH42748	Soybean	nucleus	26.53	27.25

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100815121	MapMan:15.5.13	MapMan:26.4.2.1	EMBL:ACUP02000021	ncoils:Coil
EnsemblPlantsGene:GLYMA_01G015900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	UniProt:I1J4T4	InterPro:IPR036388	EnsemblPlants:KRH74387	ProteinID:KRH74387	ProteinID:KRH74387.1
PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415
SUPFAM:SSF46785	UniParc:UPI00023375F4	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:1536576..1540311

Molecular Weight (calculated)

54075.4 Da

IEP (calculated)

4.783

GRAVY (calculated)

-0.620

Length

490 amino acids

Sequence
(BLAST)

001: MDGGGSTPAA PIPNANAPPP FLSKTYDMVE DPSTDAIVSW SATNNSFIVW DPPQFARDLL PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLKGQ
101: KHLLRSITRR KPAHGQNHQQ PQQPHGQSSS VGACVEVGKF GLEEEVERLK RDKNVLMQEL VRLRQQQQTT DNQLQTMVQR LQGMEQRQQQ MMSFLAKAVQ
201: SPGFFAQFVQ QQNDSNRRIT EVNKKRRLKQ EGMAETEHAA TPDGQIIKYQ PMVNEAAKAM LRQIMKWDTS CVESLNKNSD NYVIGDASSS SSGMDSSSSS
301: GWTSGVTLKE VSPASVQSSH VPAATGTQGH VPSTVKPEIL SVPQAVASEK VMKDGAHDPP SIPVSQADVM IPDLPPITEM VTGNILDIPE ENYMATETDE
401: GYMDSSLGAG GSFPIDFEGI SPDADIDDLL ANPIWDEILQ TSVPEDIDTN VAEASKGNEV QPMENGWGKT QHMDHLTEQM GLLSSDAKRV

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.