Factsheet for Solyc08g005170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g028930.2.1
Solyc01g108400.2.1
Solyc10g078390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	Solyc01g028930.2.1	AT1G55520.1	9801140
AT4G17750.1	Solyc10g078390.1.1	AT2G41140.1	18466301
AT4G17750.1	Solyc01g028930.2.1	AT3G13445.1	9801140
AT4G17750.1	Solyc01g108400.2.1	AT3G19100.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046000	Potato	nucleus	87.1	90.35
VIT_02s0012g01810.t01	Wine grape	nucleus	56.17	59.68
KRH07474	Soybean	nucleus	56.36	58.24
KRH74387	Soybean	nucleus	52.37	56.33
Solyc08g076590.2.1	Tomato	nucleus	52.37	56.33
KRH39566	Soybean	nucleus	52.37	55.2
GSMUA_Achr4P04500_001	Banana	nucleus	45.16	54.21
Solyc06g053960.2.1	Tomato	nucleus	14.42	53.52
GSMUA_Achr3P27600_001	Banana	nucleus	41.94	51.88
AT1G32330.1	Thale cress	nucleus	47.63	51.75
Os03t0854500-01	Rice	nucleus	48.39	50.4
CDX78797	Canola	nucleus	40.99	50.23
Bra040179.1-P	Field mustard	nucleus	40.99	50.0
CDY60785	Canola	nucleus	40.8	49.2
Bra023258.1-P	Field mustard	nucleus	44.21	47.84
CDX93842	Canola	nucleus	44.02	47.64
Solyc03g097120.2.1	Tomato	nucleus	44.02	47.25
EER93074	Sorghum	nucleus	47.25	47.25
CDY01288	Canola	nucleus	43.83	46.95
Zm00001d034886_P001	Maize	nucleus	46.68	46.68
TraesCS4A01G322300.1	Wheat	nucleus	45.92	46.45
TraesCS5D01G553300.1	Wheat	nucleus	45.73	46.17
AT4G17750.1	Thale cress	nucleus	43.26	46.06
Bra035507.1-P	Field mustard	nucleus	37.19	45.9
TraesCS5B01G556200.1	Wheat	nucleus	45.73	45.56
GSMUA_Achr4P17040_001	Banana	nucleus	41.18	44.56
Zm00001d012823_P001	Maize	nucleus	46.11	43.7
Solyc06g072750.2.1	Tomato	nucleus	38.9	42.53
CDY44649	Canola	nucleus	38.14	42.32
HORVU5Hr1G123770.1	Barley	nucleus	45.35	41.64
Solyc09g065660.2.1	Tomato	nucleus	27.7	39.25
Solyc09g082670.2.1	Tomato	nucleus	25.62	37.92
Solyc07g040680.2.1	Tomato	nucleus	22.39	33.15
CDX84097	Canola	nucleus	16.89	33.09
Solyc07g055710.2.1	Tomato	nucleus	24.29	32.99
Solyc03g006000.2.1	Tomato	nucleus	23.91	31.42
Solyc02g072000.2.1	Tomato	nucleus	23.53	30.39
Solyc12g098520.1.1	Tomato	nucleus	27.32	30.13
Solyc12g007070.1.1	Tomato	nucleus	19.17	27.37
Solyc09g009100.2.1	Tomato	nucleus	24.1	24.95

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	ProteinID:CAA47868.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162
UniProt:Q40152	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc08g005170.2	EnsemblPlants:Solyc08g005170.2.1	UniParc:UPI000012CCEF
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

HSF8Heat shock factor protein HSF8 [Source:UniProtKB/Swiss-Prot;Acc:Q40152]

Coordinates

chr8:-:111412..116839

Molecular Weight (calculated)

57704.0 Da

IEP (calculated)

4.966

GRAVY (calculated)

-0.569

Length

527 amino acids

Sequence
(BLAST)

001: MEPNSYGSGK AAVGDGVGAP MLQTAPAPAP IPSANAPPPF LVKTYDMVDD PSTDKIVSWS PTNNSFVVWD PPEFAKDLLP KYFKHNNFSS FVRQLNTYGF
101: RKVDPDRWEF ANEGFLRGQK HLLKSISRRK PAHGHAQQQQ QPHGNAQQQM QPPGHSASVG ACVEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQATDN
201: QLQGMVQRLQ GMELRQQQMM SFLAKAVNRP GFLAQFVQQQ NESNKRIAEG SKKRRIKQDI ESQDPSVTPA DGQIVKYQPG INEAAKAMLR ELSKLDSSPR
301: LDNFSNSPES FLIGDGSPQS NASSGRVSGV TLQEVPPTSG KPLLNTASAI AGQSLLPATS EMQSSHLGTC SEIINNQLSN IIPLVGGEDL HPGSLSASDM
401: IMPELSQLQG ILPENNTDVI GCDSFMDTSA VEGKVGLDII GSCLSPGADI DWQSGLLDEI EEFPSVGDPF WEKFLQSPCS PDAAMDDDIS NTSETKPQIN
501: GWDKTQNMEH LTEQMGATNI KQQKHMI

Best Arabidopsis Sequence Match ( AT1G32330.2 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SR

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.