Factsheet for Bra023258.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93842	Canola	nucleus	98.97	98.97
CDY01288	Canola	nucleus	97.95	96.95
AT1G32330.1	Thale cress	nucleus	76.8	77.11
Bra035507.1-P	Field mustard	nucleus	62.22	70.96
VIT_02s0012g01810.t01	Wine grape	nucleus	51.33	50.4
KRH74387	Soybean	nucleus	50.51	50.2
KRH39566	Soybean	nucleus	50.31	49.0
KRH07474	Soybean	nucleus	50.51	48.24
GSMUA_Achr4P04500_001	Banana	nucleus	43.33	48.06
Bra040179.1-P	Field mustard	nucleus	42.51	47.92
PGSC0003DMT400046000	Potato	nucleus	47.84	45.87
Solyc08g005170.2.1	Tomato	nucleus	47.84	44.21
Os03t0854500-01	Rice	nucleus	45.17	43.48
Bra012829.1-P	Field mustard	nucleus	21.97	43.15
GSMUA_Achr3P27600_001	Banana	nucleus	37.58	42.96
TraesCS4A01G322300.1	Wheat	nucleus	45.79	42.8
Bra021381.1-P	Field mustard	nucleus	39.63	42.51
TraesCS5D01G553300.1	Wheat	nucleus	45.38	42.34
Bra023584.1-P	Field mustard	nucleus	38.4	42.31
TraesCS5B01G556200.1	Wheat	nucleus	45.59	41.97
EER93074	Sorghum	nucleus	45.38	41.94
Bra001071.1-P	Field mustard	nucleus	38.81	41.72
GSMUA_Achr4P17040_001	Banana	nucleus	41.68	41.68
Solyc08g076590.2.1	Tomato	nucleus	41.89	41.63
PGSC0003DMT400038381	Potato	nucleus	42.3	41.37
Zm00001d034886_P001	Maize	nucleus	44.56	41.18
Bra035993.1-P	Field mustard	nucleus	23.61	40.93
Bra032023.1-P	Field mustard	nucleus	37.99	40.57
Bra012828.1-P	Field mustard	nucleus	21.97	39.78
Bra000557.1-P	Field mustard	nucleus	27.52	38.51
HORVU5Hr1G123770.1	Barley	nucleus	45.17	38.33
Bra008593.1-P	Field mustard	nucleus	37.78	38.1
Zm00001d012823_P001	Maize	nucleus	42.71	37.41
Bra007739.1-P	Field mustard	nucleus	21.15	36.14
Bra033913.1-P	Field mustard	nucleus	29.57	35.38
Bra023800.1-P	Field mustard	nucleus	28.75	35.18
Bra001885.1-P	Field mustard	nucleus	27.72	34.53
Bra015050.1-P	Field mustard	nucleus	20.74	32.69
Bra013253.1-P	Field mustard	nucleus	18.69	32.38
Bra009515.1-P	Field mustard	nucleus	23.82	31.96
Bra017595.1-P	Field mustard	nucleus	21.56	30.88
Bra020988.1-P	Field mustard	nucleus	20.12	28.08
Bra012571.1-P	Field mustard	nucleus	22.18	27.69
Bra032752.1-P	Field mustard	nucleus	23.61	24.11
Bra013358.1-P	Field mustard	nucleus	21.97	20.7

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	EnsemblPlantsGene:Bra023258	EnsemblPlants:Bra023258.1	EnsemblPlants:Bra023258.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	InterPro:IPR036388	UniProt:M4E3A7	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI00025422DE	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

AT1G32330 (E=1e-184) ATHSFA1D, HSFA1D | ATHSFA1D; DNA binding / transcription factor

Coordinates

chrA09:+:20141553..20144339

Molecular Weight (calculated)

54493.7 Da

IEP (calculated)

4.414

GRAVY (calculated)

-0.738

Length

487 amino acids

Sequence
(BLAST)

001: MDRGNRTKGG SVTMESTEIQ PSPQPQPVAV LTGNAPPPFL SKTYDMVDDP ATDSIVSWSA NNNSFIVWDP PQFAKDLLPK NFKHNNFSSF VRQLNTYGFR
101: KVDPDKWEFA NEGFLRGQKH LLKTITRRKP AHGHGPQQSQ HSIGQNSSVS SCVEVGKFGL KEEVERLKRD KNVLMQELVR LRQQQQSTDN QLQTMVQRLQ
201: GMENRQQQLM SFLAKAVQSP HFLSQFLQQQ NQQNEGSRRI SDTSKKRRFK RDGIVSNNKD SASPDGQIVK YQPPMHEQAK AMFSQLMKME PYKAGDDGFL
301: LGNGTSTTTS TEGTEMEISA NNITGISLQE MPTASEIQSS SSPSGATPEN VTVAEFPTPE EAIPSPDDLS LPEFADMLQE NIAEVPPENF LETNMEDLSP
401: ILDSDLFNND DLPFDIDDIL RDPDLEPSVD DYASLFQDIL MSSPVPDDME VTPVDVTTKD GETEQKQMDN LTQQMGLLSP ETIDLSR

Best Arabidopsis Sequence Match ( AT1G32330.2 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SR

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.