Factsheet for Bra035993.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14893	Canola	nucleus	92.17	98.86
AT5G43840.1	Thale cress	nucleus	72.95	72.69
Solyc06g053960.2.1	Tomato	nucleus	25.62	50.7
Bra012829.1-P	Field mustard	nucleus	35.59	40.32
Bra012828.1-P	Field mustard	nucleus	35.23	36.8
GSMUA_Achr8P20520_001	Banana	nucleus	37.01	35.86
KRH31657	Soybean	nucleus	42.35	35.31
GSMUA_Achr5P03000_001	Banana	nucleus	40.93	34.43
Bra007739.1-P	Field mustard	nucleus	34.88	34.39
KRG91367	Soybean	nucleus	44.48	34.15
TraesCS4D01G276500.1	Wheat	nucleus	41.28	34.02
VIT_05s0020g04090.t01	Wine grape	nucleus	42.35	33.81
TraesCS4B01G278100.1	Wheat	nucleus	40.93	33.72
Solyc09g082670.2.1	Tomato	nucleus	42.7	33.71
EER93298	Sorghum	nucleus	40.57	33.63
TraesCS4A01G027700.1	Wheat	nucleus	40.57	33.43
KRH35452	Soybean	nucleus	43.42	33.33
PGSC0003DMT400016511	Potato	nucleus	42.7	33.15
PGSC0003DMT400041944	Potato	nucleus	40.57	33.14
HORVU4Hr1G073650.2	Barley	nucleus	40.57	33.14
TraesCS5A01G437900.1	Wheat	nucleus	39.86	32.37
EER94213	Sorghum	nucleus	40.93	31.77
Zm00001d032923_P002	Maize	nucleus	40.21	31.65
TraesCS5D01G445100.1	Wheat	nucleus	39.15	31.61
Os10t0419300-00	Rice	nucleus	40.21	31.56
GSMUA_Achr6P24430_001	Banana	nucleus	34.52	31.49
TraesCS5B01G440700.1	Wheat	nucleus	39.15	31.16
EER95940	Sorghum	nucleus	40.93	30.91
Bra023800.1-P	Field mustard	nucleus	43.42	30.65
HORVU1Hr1G083420.2	Barley	nucleus	40.21	30.38
GSMUA_Achr1P27200_001	Banana	nucleus	35.94	30.33
Zm00001d018941_P001	Maize	nucleus	40.21	30.13
Bra001885.1-P	Field mustard	nucleus	41.64	29.92
Bra000557.1-P	Field mustard	nucleus	37.01	29.89
Bra033913.1-P	Field mustard	nucleus	43.06	29.73
HORVU5Hr1G094380.1	Barley	nucleus	39.15	29.65
Os07t0178600-01	Rice	nucleus	39.15	29.57
TraesCS5D01G393200.1	Wheat	nucleus	39.5	29.44
TraesCS1A01G375600.2	Wheat	nucleus	38.08	29.08
TraesCS1B01G396000.1	Wheat	nucleus	37.01	29.05
TraesCS5A01G383800.1	Wheat	nucleus	38.43	29.03
Os03t0161900-02	Rice	nucleus	39.15	29.02
TraesCS1D01G382900.1	Wheat	nucleus	37.37	28.85
Zm00001d027757_P001	Maize	nucleus	39.15	28.65
EER95463	Sorghum	nucleus	39.5	28.39
EER90889	Sorghum	nucleus	37.37	28.3
Bra015050.1-P	Field mustard	nucleus	30.61	27.83
Bra013253.1-P	Field mustard	nucleus	27.76	27.76
Zm00001d033987_P001	Maize	nucleus	36.3	27.49
TraesCS3A01G405200.1	Wheat	nucleus	37.72	26.7
TraesCS2B01G105100.1	Wheat	nucleus	38.43	26.67
Bra040179.1-P	Field mustard	nucleus	40.93	26.62
TraesCS2A01G089300.1	Wheat	nucleus	38.79	26.39
TraesCS2D01G087400.1	Wheat	nucleus	38.43	26.21
HORVU2Hr1G014590.1	Barley	nucleus	38.43	25.84
TraesCS3B01G438900.1	Wheat	nucleus	37.37	24.25
Bra009515.1-P	Field mustard	nucleus	31.32	24.24
Bra023584.1-P	Field mustard	nucleus	37.72	23.98
Bra001071.1-P	Field mustard	nucleus	38.43	23.84
Bra023258.1-P	Field mustard	nucleus	40.93	23.61
Bra017595.1-P	Field mustard	nucleus	28.11	23.24
Bra021381.1-P	Field mustard	nucleus	37.01	22.91
Bra032023.1-P	Field mustard	nucleus	37.01	22.81
Bra020988.1-P	Field mustard	nucleus	27.76	22.35
Bra012571.1-P	Field mustard	nucleus	30.25	21.79
Bra008593.1-P	Field mustard	nucleus	37.01	21.53
Bra035507.1-P	Field mustard	nucleus	32.38	21.31
HORVU5Hr1G105770.2	Barley	nucleus	39.5	21.31
Bra032752.1-P	Field mustard	nucleus	31.32	18.45
Zm00001d034433_P003	Maize	nucleus	39.5	17.87
Bra013358.1-P	Field mustard	nucleus	29.54	16.05

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EnsemblPlantsGene:Bra035993	EnsemblPlants:Bra035993.1	EnsemblPlants:Bra035993.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
InterPro:IPR036388	UniProt:M4F4J3	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015
PANTHER:PTHR10015:SF262	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI000253E662	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf

Description

AT5G43840 (E=1e-109) AT-HSFA6A, HSFA6A | AT-HSFA6A; DNA binding / transcription factor

Coordinates

chrScaffold000111:-:359260..360216

Molecular Weight (calculated)

33231.6 Da

IEP (calculated)

5.070

GRAVY (calculated)

-0.680

Length

281 amino acids

Sequence
(BLAST)

001: MDYNLPTPLE VLGETGPTPF ITKAYNIVED SSTNNIVSWS RDNNSFIVWE PETFALICLP IYFKHNNFSS FVRQLNTYGF KKIDTERWEF ANEYFLRGQK
101: QLLKNIKRRK TSSQTEMLEK FGLEREIQGM RRDKAALVIE LARLRQKQES VKTYLRFMEE KLIITERKQQ MMMDFLLKKV QKPSFLENIK KRKQQEIENL
201: EQSEEMTSSH GVEDYETFVK AEPEEYGDQF GGVFGNVDEL HIASMEDQRQ DDRVQREMNS EGIWKAYVLS DEMCILGEHL L

Best Arabidopsis Sequence Match ( AT5G43840.1 )
(BLAST)

001: MDYNLPIPLE GLKETPPTAF LTKTYNIVED SSTNNIVSWS RDNNSFIVWE PETFALICLP RCFKHNNFSS FVRQLNTYGF KKIDTERWEF ANEHFLKGER
101: HLLKNIKRRK TSSQTQTQSL EGEIHELRRD RMALEVELVR LRRKQESVKT YLHLMEEKLK VTEVKQEMMM NFLLKKIKKP SFLQSLRKRN LQGIKNREQK
201: QEVISSHGVE DNGKFVKAEP EEYGDDIDDQ CGGVFDYGDE LHIASMEHQG QGEDEIEMDS EGIWKGFVLS EEEMCDLVEH FI

Arabidopsis Description

HSFA6AHeat stress transcription factor A-6a [Source:UniProtKB/Swiss-Prot;Acc:Q1PDN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.