Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G396000.1 | Wheat | nucleus | 86.83 | 90.22 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 89.25 | 90.22 |
| TraesCS1D01G382900.1 | Wheat | nucleus | 87.63 | 89.56 |
| Os10t0419300-00 | Rice | nucleus | 76.61 | 79.61 |
| EER94213 | Sorghum | nucleus | 75.0 | 77.07 |
| Zm00001d032923_P002 | Maize | nucleus | 71.51 | 74.51 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 58.33 | 63.08 |
| Solyc06g053960.2.1 | Tomato | nucleus | 22.85 | 59.86 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 46.24 | 55.84 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 47.58 | 53.15 |
| Bra012829.1-P | Field mustard | nucleus | 34.68 | 52.02 |
| CDX95313 | Canola | nucleus | 37.37 | 51.87 |
| AT3G51910.1 | Thale cress | nucleus | 37.37 | 51.1 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 49.19 | 50.69 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 18.01 | 50.0 |
| KRH67266 | Soybean | nucleus | 51.34 | 49.48 |
| KRG95588 | Soybean | nucleus | 49.19 | 49.46 |
| CDX90626 | Canola | nucleus | 35.75 | 49.44 |
| Bra012828.1-P | Field mustard | nucleus | 35.75 | 49.44 |
| CDY29054 | Canola | nucleus | 34.95 | 49.06 |
| CDX94887 | Canola | nucleus | 35.48 | 48.89 |
| KRH31657 | Soybean | nucleus | 43.28 | 47.77 |
| KRH32059 | Soybean | nucleus | 43.55 | 47.51 |
| HORVU5Hr1G094380.1 | Barley | nucleus | 47.31 | 47.44 |
| KRG91367 | Soybean | nucleus | 46.51 | 47.27 |
| CDX90627 | Canola | nucleus | 36.29 | 47.04 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 20.43 | 46.91 |
| HORVU2Hr1G014590.1 | Barley | nucleus | 50.81 | 45.22 |
| KRH35452 | Soybean | nucleus | 44.09 | 44.81 |
| Solyc09g082670.2.1 | Tomato | nucleus | 42.74 | 44.66 |
| PGSC0003DMT400016511 | Potato | nucleus | 43.28 | 44.48 |
| CDX94884 | Canola | nucleus | 34.14 | 44.25 |
| PGSC0003DMT400049793 | Potato | nucleus | 43.28 | 44.23 |
| Solyc09g065660.2.1 | Tomato | nucleus | 44.09 | 44.09 |
| CDY34229 | Canola | nucleus | 44.89 | 44.06 |
| CDY10674 | Canola | nucleus | 45.97 | 43.96 |
| PGSC0003DMT400049795 | Potato | nucleus | 42.47 | 43.89 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 41.13 | 43.47 |
| CDY46606 | Canola | nucleus | 44.35 | 43.08 |
| CDY10311 | Canola | nucleus | 44.89 | 43.04 |
| Bra001885.1-P | Field mustard | nucleus | 45.16 | 42.97 |
| AT5G43840.1 | Thale cress | nucleus | 32.53 | 42.91 |
| CDY46607 | Canola | nucleus | 42.47 | 42.59 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 17.74 | 42.58 |
| Bra033913.1-P | Field mustard | nucleus | 46.51 | 42.51 |
| Bra023800.1-P | Field mustard | nucleus | 45.43 | 42.46 |
| AT3G63350.1 | Thale cress | nucleus | 31.99 | 42.2 |
| CDY14893 | Canola | nucleus | 29.57 | 41.98 |
| AT3G22830.1 | Thale cress | nucleus | 45.7 | 41.87 |
| PGSC0003DMT400041944 | Potato | nucleus | 38.71 | 41.86 |
| CDX92958 | Canola | nucleus | 38.44 | 41.57 |
| Bra007739.1-P | Field mustard | nucleus | 31.72 | 41.4 |
| CDY11470 | Canola | nucleus | 31.72 | 41.4 |
| CDX76693 | Canola | nucleus | 31.72 | 41.4 |
| Bra035993.1-P | Field mustard | nucleus | 30.38 | 40.21 |
| HORVU7Hr1G088920.3 | Barley | nucleus | 27.15 | 37.97 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 24.19 | 37.04 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 27.96 | 35.02 |
| HORVU3Hr1G088890.2 | Barley | nucleus | 25.81 | 33.22 |
| HORVU5Hr1G105770.2 | Barley | nucleus | 46.51 | 33.21 |
| HORVU7Hr1G087690.1 | Barley | nucleus | 32.26 | 32.88 |
| HORVU3Hr1G055960.1 | Barley | nucleus | 27.42 | 31.19 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 27.42 | 30.36 |
| HORVU6Hr1G017910.1 | Barley | nucleus | 33.6 | 27.35 |
| HORVU5Hr1G123770.1 | Barley | nucleus | 41.67 | 27.0 |
| HORVU1Hr1G081300.1 | Barley | nucleus | 30.38 | 26.22 |
| HORVU3Hr1G069590.4 | Barley | nucleus, plastid | 16.67 | 26.16 |
| HORVU0Hr1G008940.2 | Barley | cytosol, nucleus | 20.43 | 25.94 |
| HORVU3Hr1G071550.3 | Barley | nucleus | 27.42 | 23.61 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | EMBL:AK358460 | EMBL:AK363263 | ncoils:Coil | UniProt:F2D3K2 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042802 | GO:GO:0043565 |
| EMBL:HM446025 | EnsemblPlantsGene:HORVU1Hr1G083420 | EnsemblPlants:HORVU1Hr1G083420.2 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 |
| PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF258 | SMART:SM00415 |
| SUPFAM:SSF46785 | UniParc:UPI00020051B3 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
Heat shock factor A2c [Source:UniProtKB/TrEMBL;Acc:F2D3K2]
Coordinates
chrchr1H:+:531749103..531752400
Molecular Weight (calculated)
42118.4 Da
IEP (calculated)
4.732
GRAVY (calculated)
-0.776
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAVPDGIV KEEEGLLLLH EERPPAAGPP QRQRQEEDGA LPRPMEGLHE AGPPPFLTKT YDLVEDPATD QVVSWSRAGN SFVVWDPHVF ADALLPRLFK
101: HSNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQRHLLK MIKRRKPPSN APPSQQQALT SCLEVGEFGF EEEIDRLKRD KNLLITEVVK LRQEQQATKD
201: NVQAMENRLQ AAEQKQAQMM GFLARAMRNP LFFQQLVQRQ DKRKELEDAI SKKRRRPIDN VPFYGSGVTT SQSEQLDSQF LFDSGVLSDP GTHRLENLAQ
301: NIQDLGQGKT DEGKKDEANG QVELNNEFWA ELFSDDFGDG DGSGLSELEG RRPEDIDELA QQLGYLSSTS PL
101: HSNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQRHLLK MIKRRKPPSN APPSQQQALT SCLEVGEFGF EEEIDRLKRD KNLLITEVVK LRQEQQATKD
201: NVQAMENRLQ AAEQKQAQMM GFLARAMRNP LFFQQLVQRQ DKRKELEDAI SKKRRRPIDN VPFYGSGVTT SQSEQLDSQF LFDSGVLSDP GTHRLENLAQ
301: NIQDLGQGKT DEGKKDEANG QVELNNEFWA ELFSDDFGDG DGSGLSELEG RRPEDIDELA QQLGYLSSTS PL
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.