Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053960.2.1 | Tomato | nucleus | 23.3 | 57.75 |
| KRH31657 | Soybean | nucleus | 50.57 | 52.82 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 53.41 | 52.08 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 42.33 | 51.38 |
| KRG91367 | Soybean | nucleus | 51.7 | 49.73 |
| KRH35452 | Soybean | nucleus | 49.43 | 47.54 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 41.19 | 47.08 |
| AT5G43840.1 | Thale cress | nucleus | 37.22 | 46.45 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 44.03 | 46.41 |
| CDX94887 | Canola | nucleus | 34.38 | 44.81 |
| EER93298 | Sorghum | nucleus | 42.9 | 44.54 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 43.75 | 44.51 |
| CDY14893 | Canola | nucleus | 32.95 | 44.27 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 41.76 | 44.14 |
| Solyc09g082670.2.1 | Tomato | nucleus | 44.6 | 44.1 |
| EER95940 | Sorghum | nucleus | 46.59 | 44.09 |
| CDY34229 | Canola | nucleus | 47.16 | 43.8 |
| PGSC0003DMT400016511 | Potato | nucleus | 44.89 | 43.65 |
| TraesCS5D01G445100.1 | Wheat | nucleus | 42.9 | 43.39 |
| Zm00001d018941_P001 | Maize | nucleus | 46.02 | 43.2 |
| CDY10674 | Canola | nucleus | 47.73 | 43.19 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 41.76 | 43.11 |
| AT3G22830.1 | Thale cress | nucleus | 49.72 | 43.1 |
| TraesCS5B01G440700.1 | Wheat | nucleus | 43.18 | 43.06 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 42.05 | 43.02 |
| Os10t0419300-00 | Rice | nucleus | 43.75 | 43.02 |
| EER94213 | Sorghum | nucleus | 44.03 | 42.82 |
| Zm00001d032923_P002 | Maize | nucleus | 43.18 | 42.58 |
| CDY46606 | Canola | nucleus | 46.31 | 42.56 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 41.19 | 42.52 |
| Bra035993.1-P | Field mustard | nucleus | 33.81 | 42.35 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 40.91 | 42.23 |
| CDY10311 | Canola | nucleus | 46.31 | 42.01 |
| Os07t0178600-01 | Rice | nucleus | 44.32 | 41.94 |
| Bra023800.1-P | Field mustard | nucleus | 47.16 | 41.71 |
| Bra033913.1-P | Field mustard | nucleus | 48.01 | 41.52 |
| CDX94884 | Canola | nucleus | 33.81 | 41.46 |
| PGSC0003DMT400041944 | Potato | nucleus | 40.34 | 41.28 |
| CDY46607 | Canola | nucleus | 43.47 | 41.24 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 43.47 | 41.13 |
| Bra001885.1-P | Field mustard | nucleus | 45.45 | 40.92 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 41.19 | 40.5 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 42.33 | 40.49 |
| EER90889 | Sorghum | nucleus | 41.76 | 39.62 |
| TraesCS1D01G382900.1 | Wheat | nucleus | 40.91 | 39.56 |
| Zm00001d027757_P001 | Maize | nucleus | 42.9 | 39.32 |
| CDX92958 | Canola | nucleus | 38.35 | 39.24 |
| EER95463 | Sorghum | nucleus | 43.47 | 39.13 |
| HORVU5Hr1G094380.1 | Barley | nucleus | 40.91 | 38.81 |
| Os03t0161900-02 | Rice | nucleus | 41.76 | 38.79 |
| Zm00001d033987_P001 | Maize | nucleus | 40.34 | 38.27 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 44.89 | 38.26 |
| TraesCS5D01G393200.1 | Wheat | nucleus | 40.91 | 38.2 |
| TraesCS2D01G087400.1 | Wheat | nucleus | 44.6 | 38.11 |
| HORVU2Hr1G014590.1 | Barley | nucleus | 44.89 | 37.8 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 43.47 | 37.78 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 39.77 | 37.63 |
| VIT_04s0008g01110.t01 | Wine grape | nucleus | 41.48 | 37.63 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 41.19 | 36.52 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 40.34 | 32.79 |
| VIT_12s0028g01410.t01 | Wine grape | nucleus | 31.82 | 30.35 |
| VIT_02s0012g01810.t01 | Wine grape | nucleus | 42.05 | 29.84 |
| HORVU5Hr1G105770.2 | Barley | nucleus | 43.75 | 29.56 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 27.56 | 29.48 |
| VIT_10s0003g01770.t01 | Wine grape | nucleus | 28.98 | 29.39 |
| VIT_16s0039g01840.t01 | Wine grape | nucleus, plastid | 39.77 | 27.34 |
| Zm00001d034433_P003 | Maize | nucleus | 42.9 | 24.32 |
| VIT_08s0007g03900.t01 | Wine grape | nucleus | 34.09 | 22.6 |
| VIT_05s0029g00350.t01 | Wine grape | mitochondrion, nucleus | 18.75 | 15.0 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100264870 | wikigene:100264870 | MapMan:15.5.13 | ProteinID:CCB50459 | ProteinID:CCB50459.1 |
| ncoils:Coil | UniProt:F6HDT8 | EMBL:FN595749 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | EntrezGene:LOC100264870 | wikigene:LOC100264870 |
| PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF139 | SMART:SM00415 |
| SUPFAM:SSF46785 | UniParc:UPI00015C7A2C | ArrayExpress:VIT_05s0020g04090 | EnsemblPlantsGene:VIT_05s0020g04090 | EnsemblPlants:VIT_05s0020g04090.t01 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | RefSeq:XP_002279339 | RefSeq:XP_002279339.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:+:5751191..5752764
Molecular Weight (calculated)
40076.7 Da
IEP (calculated)
4.764
GRAVY (calculated)
-0.641
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPPVRGSSS SYPDEPLIAA SQRPQPMEGL HDIGPPPFLN KTYDLVDDPS TDSIVSWSIG NNSFVVWDPQ IFAGNLLPRY FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EEFLRGQKPL LKKIKRKKAL QPYTSQQAVG PSVEVERFGL DGEVDHRRRD KEVLMMELVK LRRQQQDTRA YLQAMEQRIK GTELKLKQMM
201: NFWAKVIKNP SIIQKLVQQS RTKELESALT KKRRLIDEVP TYVEAPGEGT SVKIEPHDYD DISAFEVSEL DTLAMDMEGL SKTGKKPGNE QIEKEEMKLE
301: SGNKALDIGI WEEFLNEELE GDMGLLGTVG GDDEEDVNVL VDQLCDLVSS PV
101: VDPDRWEFAN EEFLRGQKPL LKKIKRKKAL QPYTSQQAVG PSVEVERFGL DGEVDHRRRD KEVLMMELVK LRRQQQDTRA YLQAMEQRIK GTELKLKQMM
201: NFWAKVIKNP SIIQKLVQQS RTKELESALT KKRRLIDEVP TYVEAPGEGT SVKIEPHDYD DISAFEVSEL DTLAMDMEGL SKTGKKPGNE QIEKEEMKLE
301: SGNKALDIGI WEEFLNEELE GDMGLLGTVG GDDEEDVNVL VDQLCDLVSS PV
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.