Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016511 | Potato | nucleus | 95.79 | 94.2 |
| Solyc06g053960.2.1 | Tomato | nucleus | 28.37 | 71.13 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 42.98 | 52.76 |
| KRG91367 | Soybean | nucleus | 54.21 | 52.73 |
| KRH35452 | Soybean | nucleus | 53.37 | 51.91 |
| CDX94887 | Canola | nucleus | 39.33 | 51.85 |
| KRH31657 | Soybean | nucleus | 48.31 | 51.04 |
| CDY10674 | Canola | nucleus | 55.62 | 50.9 |
| CDY34229 | Canola | nucleus | 53.93 | 50.66 |
| CDY10311 | Canola | nucleus | 54.49 | 50.0 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 46.07 | 49.1 |
| CDX94884 | Canola | nucleus | 39.33 | 48.78 |
| Bra033913.1-P | Field mustard | nucleus | 55.62 | 48.65 |
| AT3G22830.1 | Thale cress | nucleus | 55.34 | 48.52 |
| Bra023800.1-P | Field mustard | nucleus | 53.93 | 48.24 |
| CDY46606 | Canola | nucleus | 51.69 | 48.04 |
| CDY46607 | Canola | nucleus | 49.44 | 47.44 |
| Bra001885.1-P | Field mustard | nucleus | 51.97 | 47.31 |
| Os10t0419300-00 | Rice | nucleus | 46.63 | 46.37 |
| Zm00001d032923_P002 | Maize | nucleus | 46.07 | 45.94 |
| CDX92958 | Canola | nucleus | 44.38 | 45.93 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 39.61 | 45.78 |
| EER93298 | Sorghum | nucleus | 43.26 | 45.43 |
| EER94213 | Sorghum | nucleus | 45.79 | 45.03 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 44.1 | 44.6 |
| Solyc09g065660.2.1 | Tomato | nucleus | 46.35 | 44.35 |
| EER95940 | Sorghum | nucleus | 46.35 | 44.35 |
| CDY14893 | Canola | nucleus | 32.58 | 44.27 |
| AT5G43840.1 | Thale cress | nucleus | 34.83 | 43.97 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 42.42 | 43.64 |
| Zm00001d018941_P001 | Maize | nucleus | 45.79 | 43.47 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 41.57 | 43.4 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 41.57 | 43.4 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 41.85 | 43.31 |
| Os07t0178600-01 | Rice | nucleus | 45.22 | 43.28 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 40.45 | 43.24 |
| TraesCS5D01G445100.1 | Wheat | nucleus | 42.13 | 43.1 |
| TraesCS5B01G440700.1 | Wheat | nucleus | 42.42 | 42.78 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 44.66 | 42.74 |
| Bra035993.1-P | Field mustard | nucleus | 33.71 | 42.7 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 44.1 | 42.66 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 40.73 | 42.52 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 42.7 | 42.46 |
| TraesCS1D01G382900.1 | Wheat | nucleus | 42.98 | 42.03 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 45.79 | 40.25 |
| HORVU2Hr1G014590.1 | Barley | nucleus | 46.91 | 39.95 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 46.07 | 39.71 |
| TraesCS2D01G087400.1 | Wheat | nucleus | 45.79 | 39.56 |
| EER95463 | Sorghum | nucleus | 42.98 | 39.13 |
| Zm00001d027757_P001 | Maize | nucleus | 42.13 | 39.06 |
| Os03t0161900-02 | Rice | nucleus | 41.57 | 39.05 |
| EER90889 | Sorghum | nucleus | 40.45 | 38.81 |
| Zm00001d033987_P001 | Maize | nucleus | 40.45 | 38.81 |
| HORVU5Hr1G094380.1 | Barley | nucleus | 40.45 | 38.81 |
| TraesCS5D01G393200.1 | Wheat | nucleus | 40.73 | 38.46 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 39.89 | 38.17 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 41.57 | 37.28 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 40.45 | 33.26 |
| Solyc07g040680.2.1 | Tomato | nucleus | 30.34 | 30.34 |
| HORVU5Hr1G105770.2 | Barley | nucleus | 42.42 | 28.98 |
| Solyc07g055710.2.1 | Tomato | nucleus | 30.06 | 27.58 |
| Solyc03g097120.2.1 | Tomato | nucleus | 36.8 | 26.68 |
| Solyc08g076590.2.1 | Tomato | nucleus | 36.24 | 26.33 |
| Solyc12g007070.1.1 | Tomato | nucleus | 27.25 | 26.29 |
| Solyc02g072000.2.1 | Tomato | nucleus | 30.06 | 26.23 |
| Solyc06g072750.2.1 | Tomato | nucleus | 34.83 | 25.73 |
| Solyc08g005170.2.1 | Tomato | nucleus | 37.92 | 25.62 |
| Solyc03g006000.2.1 | Tomato | nucleus | 28.65 | 25.44 |
| Zm00001d034433_P003 | Maize | nucleus | 43.26 | 24.8 |
| Solyc09g009100.2.1 | Tomato | nucleus | 33.71 | 23.58 |
| Solyc12g098520.1.1 | Tomato | nucleus | 29.49 | 21.97 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | UniProt:K4CVP3 | PFAM:PF00447 |
| PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF139 | SMART:SM00415 | SUPFAM:SSF46785 |
| EnsemblPlantsGene:Solyc09g082670.2 | EnsemblPlants:Solyc09g082670.2.1 | UniParc:UPI000276C33E | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chr9:+:68384249..68386509
Molecular Weight (calculated)
41760.0 Da
IEP (calculated)
5.322
GRAVY (calculated)
-0.963
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPNFGVPIK EEFPRSNEPT MWIPQPMEGL HENGPPPFLT KTYEFVDDQN TNNVVSWSIG NNSFIVWDPQ TFAMNLLPRY FKHSNFSSFV RQLNTYGFRK
101: VNPDHWEFAH EGFLRGQRHL LKTIRRRKTS NFHPGQGSNQ GIDSYIELGK LEIDGEIDRL RREKKDLMME LVELKQHQQT TKSHIKSMEE KLKRTEAKQQ
201: QMMNFLAKAM QNPRFLEQMM QQKERRKELE EEIRNKRRRQ IDHHQGPSNI VGELDHSFNN SDGNFNIKME PHEYYYGEMN GFDNLELETS LGMSMQGGPS
301: ENTINFEDKS IDHEGFWEGL LNESIEDEIN LLEGENEEDH VDVLAHQLGF LGSTPN
101: VNPDHWEFAH EGFLRGQRHL LKTIRRRKTS NFHPGQGSNQ GIDSYIELGK LEIDGEIDRL RREKKDLMME LVELKQHQQT TKSHIKSMEE KLKRTEAKQQ
201: QMMNFLAKAM QNPRFLEQMM QQKERRKELE EEIRNKRRRQ IDHHQGPSNI VGELDHSFNN SDGNFNIKME PHEYYYGEMN GFDNLELETS LGMSMQGGPS
301: ENTINFEDKS IDHEGFWEGL LNESIEDEIN LLEGENEEDH VDVLAHQLGF LGSTPN
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.