Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94213 | Sorghum | nucleus | 91.32 | 90.06 |
| Os10t0419300-00 | Rice | nucleus | 77.87 | 77.65 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 74.51 | 71.51 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 72.27 | 70.11 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 70.03 | 69.83 |
| TraesCS1D01G382900.1 | Wheat | nucleus | 71.15 | 69.78 |
| Solyc06g053960.2.1 | Tomato | nucleus | 23.53 | 59.15 |
| Zm00001d027757_P001 | Maize | nucleus | 59.1 | 54.95 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 46.78 | 54.22 |
| CDX95313 | Canola | nucleus | 40.06 | 53.36 |
| Bra012829.1-P | Field mustard | nucleus | 36.69 | 52.82 |
| AT3G51910.1 | Thale cress | nucleus | 39.5 | 51.84 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 48.18 | 51.65 |
| CDX90626 | Canola | nucleus | 38.1 | 50.56 |
| Bra012828.1-P | Field mustard | nucleus | 38.1 | 50.56 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 50.7 | 50.14 |
| CDY29054 | Canola | nucleus | 36.97 | 49.81 |
| KRG95588 | Soybean | nucleus | 51.26 | 49.46 |
| KRH67266 | Soybean | nucleus | 53.22 | 49.22 |
| CDX94887 | Canola | nucleus | 36.41 | 48.15 |
| CDX90627 | Canola | nucleus | 38.38 | 47.74 |
| Zm00001d018941_P001 | Maize | nucleus | 49.3 | 46.93 |
| KRH32059 | Soybean | nucleus | 44.82 | 46.92 |
| KRG91367 | Soybean | nucleus | 47.34 | 46.17 |
| Solyc09g082670.2.1 | Tomato | nucleus | 45.94 | 46.07 |
| PGSC0003DMT400016511 | Potato | nucleus | 46.22 | 45.58 |
| CDY34229 | Canola | nucleus | 47.9 | 45.12 |
| CDY10674 | Canola | nucleus | 49.02 | 44.99 |
| KRH31657 | Soybean | nucleus | 42.3 | 44.81 |
| Zm00001d033987_P001 | Maize | nucleus | 46.5 | 44.74 |
| PGSC0003DMT400049793 | Potato | nucleus | 45.1 | 44.23 |
| CDY46606 | Canola | nucleus | 47.34 | 44.13 |
| CDY10311 | Canola | nucleus | 47.9 | 44.07 |
| CDY46607 | Canola | nucleus | 45.66 | 43.94 |
| Solyc09g065660.2.1 | Tomato | nucleus | 45.66 | 43.82 |
| PGSC0003DMT400049795 | Potato | nucleus | 43.98 | 43.61 |
| AT3G22830.1 | Thale cress | nucleus | 49.58 | 43.6 |
| CDX94884 | Canola | nucleus | 35.01 | 43.55 |
| Bra033913.1-P | Field mustard | nucleus | 49.58 | 43.49 |
| KRH35452 | Soybean | nucleus | 44.54 | 43.44 |
| Bra023800.1-P | Field mustard | nucleus | 48.18 | 43.22 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 42.58 | 43.18 |
| AT3G63350.1 | Thale cress | nucleus | 33.61 | 42.55 |
| AT5G43840.1 | Thale cress | nucleus | 33.61 | 42.55 |
| Bra001885.1-P | Field mustard | nucleus | 46.5 | 42.46 |
| PGSC0003DMT400041944 | Potato | nucleus | 40.9 | 42.44 |
| CDY11470 | Canola | nucleus | 33.33 | 41.75 |
| Bra007739.1-P | Field mustard | nucleus | 33.33 | 41.75 |
| CDY14893 | Canola | nucleus | 30.53 | 41.6 |
| CDX76693 | Canola | nucleus | 33.05 | 41.4 |
| CDX92958 | Canola | nucleus | 39.22 | 40.7 |
| Bra035993.1-P | Field mustard | nucleus | 31.65 | 40.21 |
| Zm00001d043536_P001 | Maize | nucleus | 26.61 | 38.15 |
| Zm00001d046299_P001 | Maize | nucleus | 26.33 | 35.21 |
| Zm00001d016255_P001 | Maize | nucleus | 24.93 | 34.63 |
| Zm00001d046204_P001 | Maize | nucleus | 34.73 | 33.97 |
| Zm00001d044168_P001 | Maize | nucleus | 28.01 | 30.21 |
| Zm00001d034886_P001 | Maize | nucleus | 42.58 | 28.84 |
| Zm00001d034433_P003 | Maize | nucleus | 49.86 | 28.66 |
| Zm00001d044259_P001 | Maize | plastid | 29.41 | 27.85 |
| Zm00001d048041_P004 | Maize | nucleus | 34.45 | 27.21 |
| Zm00001d012823_P001 | Maize | nucleus | 40.34 | 25.9 |
| Zm00001d011406_P001 | Maize | nucleus | 27.73 | 25.58 |
| Zm00001d016674_P001 | Maize | nucleus | 35.85 | 25.2 |
| Zm00001d012749_P001 | Maize | nucleus | 30.25 | 24.94 |
| Zm00001d010812_P001 | Maize | nucleus | 30.25 | 24.05 |
| Zm00001d038746_P001 | Maize | nucleus | 29.69 | 22.6 |
| Zm00001d016520_P001 | Maize | nucleus | 31.65 | 21.4 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100280736 | MapMan:15.5.13 | UniProt:A0A060D206 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042802 | GO:GO:0043565 | InterPro:HSF_DNA-bd |
| InterPro:HSF_fam | InterPro:IPR036388 | EMBL:KJ727859 | ProteinID:ONM06342.1 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF258 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI000221EACC |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | EnsemblPlantsGene:Zm00001d032923 | EnsemblPlants:Zm00001d032923_P002 | EnsemblPlants:Zm00001d032923_T002 | SEG:seg |
Description
HSF-transcription factor 24Heat stress transcription factor A-6b
Coordinates
chr1:-:243208029..243211663
Molecular Weight (calculated)
40504.8 Da
IEP (calculated)
4.726
GRAVY (calculated)
-0.722
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKPVAPGII KEELLEQQPP TQDGVGGGGD APRPMEGLHE VGPPPFLTKT FDLVEDPATD AVLSWSRAGN SFIVWDPHVF ADGLLPRLFK HSNFSSFVRQ
101: LNTYGFRKVD PDRWEFANEG FLRGQRHLLK MIKRRKPPSA VAPLRQQRAP ASCLEVGEFG FEEEIDRLKR DKNILITEVV KLRQEQQSTK DHVRAMEERL
201: RVAEQKQVQM MGFLARAMRN PEFFQQLAQQ QDKRKELEDT ISKKRRRPID NTPFYSDGES EQLDSQLKMF ESGVLNGLNE PELENLAVNI QELGKGSIDD
301: GNLTQVSDQS ELNDDFWAEL LVEDFGDKAG QPELEGRTED VNDLAQQLGY LSSSSPK
101: LNTYGFRKVD PDRWEFANEG FLRGQRHLLK MIKRRKPPSA VAPLRQQRAP ASCLEVGEFG FEEEIDRLKR DKNILITEVV KLRQEQQSTK DHVRAMEERL
201: RVAEQKQVQM MGFLARAMRN PEFFQQLAQQ QDKRKELEDT ISKKRRRPID NTPFYSDGES EQLDSQLKMF ESGVLNGLNE PELENLAVNI QELGKGSIDD
301: GNLTQVSDQS ELNDDFWAEL LVEDFGDKAG QPELEGRTED VNDLAQQLGY LSSSSPK
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.