Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95463 | Sorghum | nucleus | 89.84 | 88.24 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 58.59 | 65.98 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 58.07 | 65.4 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 58.07 | 65.4 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 58.33 | 65.12 |
| Os03t0161900-02 | Rice | nucleus | 61.46 | 62.27 |
| Zm00001d032923_P002 | Maize | nucleus | 54.95 | 59.1 |
| Solyc06g053960.2.1 | Tomato | nucleus | 20.83 | 56.34 |
| CDX95313 | Canola | nucleus | 37.24 | 53.36 |
| AT3G51910.1 | Thale cress | nucleus | 36.98 | 52.21 |
| Bra012829.1-P | Field mustard | nucleus | 33.59 | 52.02 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 41.67 | 51.95 |
| CDX90626 | Canola | nucleus | 36.2 | 51.67 |
| Bra012828.1-P | Field mustard | nucleus | 35.94 | 51.3 |
| CDY29054 | Canola | nucleus | 35.16 | 50.94 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 45.57 | 48.48 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 41.41 | 47.75 |
| CDX90627 | Canola | nucleus | 35.68 | 47.74 |
| KRG95588 | Soybean | nucleus | 45.83 | 47.57 |
| Zm00001d033987_P001 | Maize | nucleus | 45.57 | 47.17 |
| KRH67266 | Soybean | nucleus | 46.88 | 46.63 |
| KRH32059 | Soybean | nucleus | 41.41 | 46.63 |
| AT3G63350.1 | Thale cress | nucleus | 33.85 | 46.1 |
| CDY11470 | Canola | nucleus | 33.59 | 45.26 |
| Bra007739.1-P | Field mustard | nucleus | 33.59 | 45.26 |
| KRH31657 | Soybean | nucleus | 39.32 | 44.81 |
| Solyc09g065660.2.1 | Tomato | nucleus | 43.23 | 44.62 |
| PGSC0003DMT400049793 | Potato | nucleus | 42.19 | 44.51 |
| KRG91367 | Soybean | nucleus | 42.19 | 44.26 |
| CDX76693 | Canola | nucleus | 32.81 | 44.21 |
| PGSC0003DMT400049795 | Potato | nucleus | 41.15 | 43.89 |
| Zm00001d018941_P001 | Maize | nucleus | 41.93 | 42.93 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 39.32 | 42.9 |
| CDY34229 | Canola | nucleus | 41.93 | 42.48 |
| CDY10674 | Canola | nucleus | 42.97 | 42.42 |
| KRH35452 | Soybean | nucleus | 40.36 | 42.35 |
| CDX94887 | Canola | nucleus | 29.69 | 42.22 |
| Solyc09g082670.2.1 | Tomato | nucleus | 39.06 | 42.13 |
| PGSC0003DMT400016511 | Potato | nucleus | 39.32 | 41.71 |
| CDY46606 | Canola | nucleus | 41.41 | 41.51 |
| AT3G22830.1 | Thale cress | nucleus | 43.75 | 41.38 |
| CDY10311 | Canola | nucleus | 41.67 | 41.24 |
| Bra033913.1-P | Field mustard | nucleus | 43.23 | 40.79 |
| Bra023800.1-P | Field mustard | nucleus | 42.19 | 40.7 |
| CDY46607 | Canola | nucleus | 39.06 | 40.43 |
| AT5G43840.1 | Thale cress | nucleus | 29.69 | 40.43 |
| CDY14893 | Canola | nucleus | 27.34 | 40.08 |
| Bra035993.1-P | Field mustard | nucleus | 28.65 | 39.15 |
| Bra001885.1-P | Field mustard | nucleus | 39.84 | 39.13 |
| CDX94884 | Canola | nucleus | 29.17 | 39.02 |
| PGSC0003DMT400041944 | Potato | nucleus | 34.9 | 38.95 |
| CDX92958 | Canola | nucleus | 33.59 | 37.5 |
| Zm00001d043536_P001 | Maize | nucleus | 22.66 | 34.94 |
| Zm00001d046204_P001 | Maize | nucleus | 32.55 | 34.25 |
| Zm00001d046299_P001 | Maize | nucleus | 23.44 | 33.71 |
| Zm00001d016255_P001 | Maize | nucleus | 22.4 | 33.46 |
| Zm00001d044168_P001 | Maize | nucleus | 25.78 | 29.91 |
| Zm00001d048041_P004 | Maize | nucleus | 31.77 | 26.99 |
| Zm00001d034886_P001 | Maize | nucleus | 35.42 | 25.81 |
| Zm00001d016674_P001 | Maize | nucleus | 34.11 | 25.79 |
| Zm00001d034433_P003 | Maize | nucleus | 41.67 | 25.76 |
| Zm00001d011406_P001 | Maize | nucleus | 25.78 | 25.58 |
| Zm00001d044259_P001 | Maize | plastid | 24.74 | 25.2 |
| Zm00001d012749_P001 | Maize | nucleus | 27.08 | 24.02 |
| Zm00001d010812_P001 | Maize | nucleus | 27.34 | 23.39 |
| Zm00001d012823_P001 | Maize | nucleus | 33.07 | 22.84 |
| Zm00001d038746_P001 | Maize | nucleus | 27.34 | 22.39 |
| Zm00001d016520_P001 | Maize | nucleus | 27.6 | 20.08 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100280131 | MapMan:15.5.13 | UniProt:B8A239 | EMBL:BT055631 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam |
| InterPro:IPR036388 | ProteinID:ONL93871.1 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 |
| PANTHER:PTHR10015:SF201 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI000191755C | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| EnsemblPlantsGene:Zm00001d027757 | EnsemblPlants:Zm00001d027757_P001 | EnsemblPlants:Zm00001d027757_T001 | SEG:seg | : | : |
Description
HSF-transcription factor 13Heat stress transcription factor A-6b
Coordinates
chr1:+:12714065..12716389
Molecular Weight (calculated)
43270.9 Da
IEP (calculated)
5.074
GRAVY (calculated)
-0.759
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLMLPVTVK EEWPPEEEEE EDVDADADAP RPMEGLHEVG PPPFLTKTFD LVADPATDEV ISWGRAGNSF VVWDPHVFAA VLLPRFFKHN NFSSFVRQLN
101: TYGFRKIDPD SWEFANEGFL RGQRHLLRLI KRRRPAPPPP YLQASQSQGS CLEVGRFGGL DGEMERLRRD KSILLAEVVK LRQEQQSTRA GMRAMEERLR
201: HAEHKQVQMM GFLARAVQSP DLFQLLAQQQ ARRRELEGAA LLSAASRKRR RPIGAAPANG GLQQQEEEQQ QGDDDDPTAT RALFAELDER GTTSELENLA
301: LNIQGLGKRR QDGSEKQGGR ARSQQQGGFE TAELTDDFWE ELLNEGMKGG AEAETLPPER RRPAWYVDAL AQKLSSMSNN TTAK
101: TYGFRKIDPD SWEFANEGFL RGQRHLLRLI KRRRPAPPPP YLQASQSQGS CLEVGRFGGL DGEMERLRRD KSILLAEVVK LRQEQQSTRA GMRAMEERLR
201: HAEHKQVQMM GFLARAVQSP DLFQLLAQQQ ARRRELEGAA LLSAASRKRR RPIGAAPANG GLQQQEEEQQ QGDDDDPTAT RALFAELDER GTTSELENLA
301: LNIQGLGKRR QDGSEKQGGR ARSQQQGGFE TAELTDDFWE ELLNEGMKGG AEAETLPPER RRPAWYVDAL AQKLSSMSNN TTAK
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.